diff --git a/graphify/skill-aider.md b/graphify/skill-aider.md
index f70136f1..7c745f3c 100644
--- a/graphify/skill-aider.md
+++ b/graphify/skill-aider.md
@@ -641,7 +641,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-claw.md b/graphify/skill-claw.md
index eefa5782..2f3b3a7f 100644
--- a/graphify/skill-claw.md
+++ b/graphify/skill-claw.md
@@ -641,7 +641,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-codex.md b/graphify/skill-codex.md
index d16d4986..f3c44081 100644
--- a/graphify/skill-codex.md
+++ b/graphify/skill-codex.md
@@ -699,7 +699,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-copilot.md b/graphify/skill-copilot.md
index f6572a17..cfccee54 100644
--- a/graphify/skill-copilot.md
+++ b/graphify/skill-copilot.md
@@ -699,7 +699,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f graphify-out/.graphify_detect.json graphify-out/.graphify_extract.json graphify-out/.graphify_ast.json graphify-out/.graphify_semantic.json graphify-out/.graphify_analysis.json graphify-out/.graphify_labels.json
+rm -f graphify-out/.graphify_detect.json graphify-out/.graphify_extract.json graphify-out/.graphify_ast.json graphify-out/.graphify_semantic.json graphify-out/.graphify_analysis.json graphify-out/.graphify_labels.json graphify-out/.graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-droid.md b/graphify/skill-droid.md
index e5ac7405..1f257357 100644
--- a/graphify/skill-droid.md
+++ b/graphify/skill-droid.md
@@ -696,7 +696,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-kiro.md b/graphify/skill-kiro.md
index 944f4323..f04bc0f7 100644
--- a/graphify/skill-kiro.md
+++ b/graphify/skill-kiro.md
@@ -640,7 +640,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-opencode.md b/graphify/skill-opencode.md
index b1a8da6e..d0325a4a 100644
--- a/graphify/skill-opencode.md
+++ b/graphify/skill-opencode.md
@@ -695,7 +695,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill-trae.md b/graphify/skill-trae.md
index 89b34c61..5dfdc2d1 100644
--- a/graphify/skill-trae.md
+++ b/graphify/skill-trae.md
@@ -674,7 +674,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json
+rm -f .graphify_detect.json .graphify_extract.json .graphify_ast.json .graphify_semantic.json .graphify_analysis.json .graphify_labels.json .graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```
 
diff --git a/graphify/skill.md b/graphify/skill.md
index 89ca46e7..a2c029ab 100644
--- a/graphify/skill.md
+++ b/graphify/skill.md
@@ -746,7 +746,7 @@ cost_path.write_text(json.dumps(cost, indent=2))
 print(f'This run: {input_tok:,} input tokens, {output_tok:,} output tokens')
 print(f'All time: {cost[\"total_input_tokens\"]:,} input, {cost[\"total_output_tokens\"]:,} output ({len(cost[\"runs\"])} runs)')
 "
-rm -f graphify-out/.graphify_detect.json graphify-out/.graphify_extract.json graphify-out/.graphify_ast.json graphify-out/.graphify_semantic.json graphify-out/.graphify_analysis.json graphify-out/.graphify_labels.json
+rm -f graphify-out/.graphify_detect.json graphify-out/.graphify_extract.json graphify-out/.graphify_ast.json graphify-out/.graphify_semantic.json graphify-out/.graphify_analysis.json graphify-out/.graphify_labels.json graphify-out/.graphify_chunk_*.json
 rm -f graphify-out/.needs_update 2>/dev/null || true
 ```