#1174: affected.py load_graph now forces directed=True before
node_link_graph, matching the identical fix in serve.py and __main__.py.
Undirected graphs (directed:false in graph.json) were causing in_edges
to fall back to a direction-blind scan, missing true callers and
reporting false positives. Regression test added.
#1173: post-commit and post-checkout hook bodies now read
graphify-out/.graphify_root before calling _rebuild_code, falling back
to Path('.') if absent. A scoped build (graphify src/) no longer gets
silently expanded to the full repo on the next commit. Tests added.
#1172: Step 9 cleanup split into rm -f for fixed files and
find -maxdepth 1 -delete for the chunk glob. Under fish/zsh an
unmatched glob aborts the entire rm -f line, leaving temp files on disk.
Fixed in the three skillgen source fragments and regenerated.
#1163: detect_incremental type guard on stored mtime — if the manifest
contains a dict-valued mtime (schema drift from older versions), coerce
to None rather than propagating a non-numeric into comparisons.
Regression test added.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
#1170 — replace nohup with cross-platform Python detach in git hooks.
Git for Windows MSYS has no nohup so post-commit/post-checkout hooks
silently failed. Now uses subprocess.Popen with DETACHED_PROCESS |
CREATE_NEW_PROCESS_GROUP on Windows, start_new_session=True on POSIX.
Quoting-safe (argv list). Fixes#1161.
#1169 — fix _is_sensitive false positives on topic-mentioning filenames.
token-economics-of-recall.md and password-policy-discussion.md were
silently dropped as secrets. Generic keywords (token/secret/password)
now only fire when the keyword ends the filename stem or the stem is
≤2 words. Specific patterns (.env/.pem/id_rsa etc.) remain unconditional.
#1165 — fix multi-word endpoint resolution in _score_nodes.
graphify path "AuthService" "UserRepo" never fired the exact-match bonus
because per-token comparison never equalled the full label. Now joins
normalized tokens and compares against the full label and its tokenized
form. O(1) per node, affects query_graph and shortest_path uniformly.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Per adversarial review of the #1127 fix:
- Apply the filesystem-path allowlist to sys.executable before embedding it in
the generated hook script. Paths with metacharacters outside [a-zA-Z0-9/_.@:\-]
(spaces, dollar signs, backticks, semicolons) are replaced with an empty string
so the pinned probe is safely skipped rather than injecting shell commands that
execute on every git commit.
- Change _PINNED='...' to single-quote assignment so no shell expansion can occur
even if a character slipped through the allowlist (belt and suspenders).
- Quote $GRAPHIFY_PYTHON in both nohup exec lines so paths with spaces work
(common in Windows C:\Program Files\... installs).
- Update test to assert the sanitized value, not raw sys.executable, so the test
stays correct after any future sanitization changes.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
graphify hook install generated scripts that resolved the Python interpreter
purely at git-trigger time via 'command -v graphify'. GUI git clients (VS Code,
GitKraken), CI runners, and non-login shells often run with a minimal PATH that
omits ~/.local/bin -- the uv-tool / pipx launcher location. command -v graphify
returned empty, the python3/python fallbacks could not import graphify (it lives
only in the isolated venv), and the hook silently exited 0 with no output.
Fix: embed sys.executable of the currently-running install process as a pinned
first probe. Since 'graphify hook install' itself runs under the correct isolated
interpreter, sys.executable is always the right path. It is validated at
hook-runtime via 'import graphify' before use, so a stale pinned path safely
falls through to the existing dynamic detection rather than breaking the hook.
Also make the final fallback loud: print a diagnostic to stderr before exiting 0
so the failure is visible rather than invisible.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Codex Desktop rejects hookSpecificOutput.additionalContext on PreToolUse.
hook-check is now a no-op — graph guidance reaches the agent via AGENTS.md/skill.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Safi