20 Commits

Author SHA1 Message Date
nauman73 e5f263ba98 fix(windows): unblock pipeline on Windows consoles + missing __main__ guards (#788)
Three independent Windows compatibility fixes shipped together because they
all surface during the same first /graphify run on Windows.

graphify/benchmark.py
  print_benchmark() unconditionally printed U+2500 (box-drawing) and U+2192
  (rightwards arrow), which UnicodeEncodeError'd on stdouts that can't encode
  them — most notably the legacy Windows console at cp1252. New _safe()
  helper falls back to ASCII when the active stdout encoding can't carry the
  glyph; _hr() uses it. Two regression tests cover both paths and prove
  print_benchmark survives a cp1252-strict stream.

graphify/extract.py
  ProcessPoolExecutor on Windows uses spawn, so worker subprocesses
  re-import the calling __main__. When the caller is `python -c "..."` or a
  script without an `if __name__ == "__main__":` guard, the workers
  recursively spawn themselves and the pool dies. The user-visible failure
  was a 290-line traceback ending in BrokenProcessPool, hiding the actual
  cause. _extract_parallel now catches BrokenProcessPool, prints a one-line
  warning that names the __main__-guard idiom, and returns False so the
  public extract() routes to the existing _extract_sequential fallback. Two
  tests cover the parallel-returns-False contract and the sequential
  fallback wiring.

graphify/skill-windows.md
  Every `python -c "..."` block (30 in total) is replaced with a
  Write+run+delete pattern using PowerShell's literal here-string @'...'@.
  The old form was a quote-escaping minefield: any double-quote inside the
  Python source had to be backslash-escaped for the shell, and PowerShell's
  parser ate them inconsistently — failing on f-strings like
  `f'AST: {len(result["nodes"])} nodes'`. The new form passes Python source
  to disk literally, so what the model writes is what Python sees. The AST
  step's script template now includes an explicit `if __name__ == "__main__":`
  guard so multi-core extraction works even before the runtime fallback above
  kicks in. All 31 resulting heredoc blocks parse cleanly under
  `ast.parse`.

Co-authored-by: Nauman Hameed <Nauman.Hameed@enghouse.com>
2026-05-09 12:59:38 +01:00
SerkanGezici 8489b26d06 fix(extract): use language_tsx for .tsx files to enable JSX-aware parsing (#766)
tree-sitter-typescript ships two grammars:
- language_typescript: pure TypeScript, no JSX support
- language_tsx:        JSX-aware variant for .tsx files

Currently both .ts and .tsx are parsed with language_typescript, which
treats JSX syntax as parse errors. Every function declaration, arrow
function, and call_expression nested inside a JSX tree is silently
dropped from the extracted graph.

Repro on a representative React+TypeScript codebase (a 13-file Tauri app):
parsing each .tsx with language_typescript produces ~276 ERROR nodes per
file. Only declarations that happen to live before the first JSX block
survive.

Fix: add _TSX_CONFIG that mirrors _TS_CONFIG but selects language_tsx,
and route .tsx files to it in extract_js().

Effect on the same repo (graphify update --force):
  Nodes:        303 → 618  (+104%)
  Edges:        482 → 779  (+62%)
  Communities:   28 → 45   (+61%)
  Parse errors  276 → 0    per .tsx file

Tests added:
- tsx fixture with helpers + JSX-returning component
- helpers and component are captured
- JSX expression calls ({fmtDate(now)}) resolve to call edges
- wiring check: .tsx uses language_tsx, .ts uses language_typescript

Note: this fixes the parsing layer. Calls inside deeply nested arrow
function callbacks (e.g. items.map(x => <T>{f(x)}</T>)) are still
missed by the call extraction logic — separate enhancement.

Co-authored-by: Serkan Gezici <serkan@quadroaipilot.com>
2026-05-07 20:07:36 +01:00
Safi 9bbd14a7dd Merge PR #753: CommonJS require() imports as EXTRACTED edges
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-07 10:28:44 +01:00
Safi 935312c227 Merge PR #671: tree-sitter version mismatch hint 2026-05-07 10:25:35 +01:00
Mani Saint-Victor, MD 2dd6ee6a9c fix: promote cross-file call edges to EXTRACTED when import evidence exists
The cross-file call resolver in `extract()` unconditionally marked every
resolved call edge as INFERRED with confidence_score 0.8 — even when the
caller's file had an explicit `imports` (symbol) or `imports_from`
(module) edge to the callee. The new CJS require handler made this gap
visible: imports were correctly EXTRACTED but the call edges that those
imports backed remained INFERRED, so downstream consumers couldn't tell
high-evidence calls apart from name-match guesses.

This pass runs after the file-id remap (line 4736), so we relativize
node `source_file` paths before computing file_nids — otherwise the
caller's computed file_nid (absolute-path-derived) wouldn't match the
imports_from edge source (already remapped to relative form).

Promotion rule:
  - Symbol-level `imports` edge from caller's file -> callee node id
    => EXTRACTED, confidence_score 1.0
  - Module-level `imports_from` edge from caller's file -> callee's file
    => EXTRACTED, confidence_score 1.0
  - Otherwise => INFERRED, confidence_score 0.8 (existing behavior)

Validated on a 92-file CJS orchestrator: 5 previously-INFERRED edges
from runExecute() now resolve to EXTRACTED, and 88% of cross-file calls
in the corpus (104 of 118) promote, leaving INFERRED only for genuine
heuristic guesses with no import backing.

Adds two tests:
  - test_cross_file_call_promoted_to_extracted_with_import_evidence
  - test_cross_file_call_remains_inferred_without_import_evidence
2026-05-06 13:13:30 -04:00
Mani Saint-Victor, MD c902ae952b fix: extract CommonJS require() imports as EXTRACTED edges
The JS/TS extractor only handled ES `import` statements; CommonJS
`require()` calls produced no import edges. Downstream, the call-graph
pass could not resolve which symbols belonged to which file, so every
cross-file call in CJS Node.js codebases was downgraded to INFERRED
even when the binding was a top-of-file destructured require.

Adds three patterns to `_js_extra_walk` via a new `_require_imports_js`
helper:

  const { foo, bar: alias } = require('./mod')   -> imports_from + per-symbol imports
  const mod = require('./mod')                   -> imports_from
  const x = require('./mod').y                   -> imports_from + symbol edge for y

Refactors path-resolution out of `_import_js` into
`_resolve_js_import_target` so ES imports and CJS requires share the
relative / tsconfig-alias / bare-module logic.

Tested in a 92-file CJS Node.js orchestrator codebase: confirmed all
five previously INFERRED `runExecute -> {loadFoundation,
validateDispatchConfig, fetchSymphonyIssues, listSymphonyWorktrees,
workspacePathForIssue}` edges resolve to real top-of-file destructured
requires, so downstream calls would now be EXTRACTED instead of
INFERRED.
2026-05-06 09:41:56 -04:00
Farhan M 68081c1c89 feat(extract): add Markdown structural extraction + sync collect_files extensions
1. NEW: extract_markdown() — structurally indexes .md/.mdx files into the
   knowledge graph. Headings become nodes, code blocks become nodes with
   language tags, and nesting produces 'contains' edges. Zero new deps
   (pure regex/line-by-line parsing, no tree-sitter needed).

2. FIX: collect_files() _EXTENSIONS was hardcoded and missing 18 extensions
   that _DISPATCH already supported (.jsx, .mjs, .ex, .exs, .jl, .vue,
   .svelte, .dart, .v, .sv, .sql, .f, .F, .f90, etc). Now uses
   set(_DISPATCH.keys()) to stay automatically in sync.

3. Added deploy_guide.md test fixture and 6 new test cases.
4. Updated test_collect_files_from_dir to use dynamic extension set.
2026-05-04 19:08:50 +05:30
azizur100389 189847eb47 fix: surface tree-sitter version-mismatch hint instead of bare TypeError
When a user has an older tree-sitter installed against a newer language
binding (or vice versa), Language() raises TypeError with messages like
"missing 1 required positional argument: 'name'". The previous catch-all
Exception handler stored that bare message in the per-file error field,
giving users no actionable signal.

Add a dedicated TypeError branch in _extract_generic() that returns a
clearer error with the upgrade command:

  tree-sitter version mismatch for tree_sitter_python: ... .
  Try: pip install --upgrade tree-sitter tree-sitter-languages

Behavior is unchanged for all non-version-mismatch errors - the broader
Exception handler still runs as before.
2026-05-03 00:27:10 +01:00
Safi 28047b502f merge PR #573: cross-language edge context filters in MCP query tool
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-02 16:49:22 +01:00
Safi 996e82b3d9 test: add regression test for ambiguous cross-file call resolution (#632) 2026-05-02 16:39:53 +01:00
Danil Tarasov 3ff7188fbf feat: add cross-language edge contexts and context-aware queries 2026-04-24 02:59:04 +03:00
Safi ca842472e5 Fix AST call edges confidence: INFERRED/0.8 -> EXTRACTED/1.0 (#127)
Tree-sitter resolves call targets directly from source — marking them
INFERRED was incorrect. Cross-file class-level uses edges remain INFERRED.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-09 09:22:12 +01:00
Safi a78d25d4fc Add ObjC support, C# inheritance, CLI query, symlink support, bug fixes (v0.3.7-0.3.9)
- Add Objective-C extractor (.m/.mm) with @interface, @implementation, @protocol, imports, calls
- Add C# inheritance extraction via base_list nodes (inherits edges)
- Add --obsidian-dir flag to skill.md and skill-windows.md
- Add graphify query CLI command with --dfs, --budget, --graph flags
- Add follow_symlinks parameter to detect() and collect_files() with cycle detection
- Fix semantic cache relative path resolution (was saving only 4/17 files)
- Fix validate.py missing rationale file_type causing 75 warnings per run
- Add tree-sitter-objc dependency
- Update README with .m/.mm extensions, --obsidian-dir usage, Codex $ skill trigger
- 367 tests passing

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-07 20:20:49 +01:00
Safi 3d5da6039a Add Elixir language support (.ex/.exs)
Extracts defmodule, def/defp, alias/import/require/use, and call graph.
Follows same custom-walk pattern as Zig and PowerShell extractors.
2026-04-07 12:54:12 +01:00
Safi 9d998cc810 Add Zig and PowerShell language support 2026-04-07 09:56:53 +01:00
Safi 477465ae0d feat: Swift language support
* feat: add Swift language support

Add tree-sitter-swift extractor for classes, structs, protocols,
functions, imports, and call graph edges. Includes 8 passing tests.

* feat: full Swift AST support — enums, extensions, actors, conformance

- Enums: extract enum types, methods, and cases (case_of edges)
- Extensions: methods attach to the original type (no duplicate nodes)
- Actors: recognized via unified class_declaration node type
- Conformance/inheritance: inherits edges from : Protocol syntax
- deinit/subscript: name resolution for nameless declarations
- 12 new tests (110 total, all passing)
2026-04-06 21:59:38 +01:00
Safi 5db8f7ce39 docs: update surprising connections description, test count
style: replace all em dashes with hyphens

fix: explain hidden .graphify/ folder in skill output and README

fix: rename .graphify/ to graphify-out/ so output is visible by default
2026-04-06 16:06:31 +01:00
Safi 81a43f028f feat: 13-language AST support and token benchmark
Java, C, C++, Ruby, C#, Kotlin, Scala, PHP via tree-sitter (13 total)
benchmark.py measures BFS subgraph tokens vs corpus tokens
5 skill bug fixes (cohesion crash, dead step, missing MCP tool)
2026-04-04 18:56:38 +01:00
Safi e7a03a0539 feat: cache, multi-language extraction, MCP, memory feedback
call-graph INFERRED edges, multi-language semantic extraction, SHA256 cache,
MCP stdio server with shortest_path, Q&A memory feedback loop
2026-04-04 18:56:38 +01:00
Safi ce47198be1 feat: Claude Code skill, Obsidian vault, install, tests
skill.md with full pipeline steps, Obsidian as default output (canvas, tags,
dataview, graph colors), two-command install, 71 tests, .gitignore, deps
2026-04-04 18:53:43 +01:00