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dr mike c488c0e07d fix(install): write .graphify_version atomically via os.replace 
Match the SKILL.md / references/ crash-safety pattern so an interrupted install cannot leave a truncated stamp, and replace managed symlinks instead of writing through them.

Fixes #3286

(cherry picked from commit 030c6372d1)
 2026-09-05 01:18:59 +01:00