The Windows skill variant had a PowerShell Step 1 but its later steps came
from the shared core fragment as bash-only shell (cat-piped interpreter
invocations, rm -f, find -delete). The skillgen renderer now translates the
composed core to PowerShell for powershell-shell platforms (here-string
interpreter invocations, Remove-Item cleanup); POSIX skills are unchanged
and step / #2490 parity is enforced by a generator check. Not a regression
from 0.9.35 (skill files were unchanged between 0.9.34 and 0.9.35).
Thanks @tannermosher2015-debug.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
#2486 (thanks @adminwat): normalize dict-shaped hyperedge members to ids
(or drop with a warning) so a malformed hyperedge can't abort a completed
merge with a TypeError.
#2484 (thanks @sortakool; approach from @oleksii-tumanov's #1691):
merge-graphs relabels hyperedge member ids and ids with the repo prefix,
unions both inputs' hyperedges instead of clobbering, and writes both
persistence slots.
#2485 (thanks @sortakool): build_from_json reads hyperedges from the
top-level and nested slots; a full validation wipeout is reported loudly.
#2490 (thanks @PapiScholz): the skill Step-5 flow passes curated
community_labels to to_json, so graph.json ships community_name.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
The --update runbook's Step 9 stamped the entire detected corpus into the
manifest, so a semantic file (doc/paper/image) whose chunk failed or was omitted
was recorded as done and never re-queued on the next update — losing its content
permanently. The runbook now builds the manifest the way the library extract
path does: cli._stamped_manifest_files stamps only files that actually produced
nodes/edges/hyperedges, dispatched-but-empty files have their stale hash cleared,
and scan_corpus drops newly-excluded in-root rows.
Applied to the Claude, Aider, and Devin skill bodies and the shared update
reference; all 134 artifacts regenerated. gen.py gains a sanctioned monolith-
diff predicate for the new stamping lines.
The semantic cache keyed entries on sha256(file content + path) alone, with
no component for the extraction prompt that produced them. After an upgrade
that changed the prompt, every unchanged file was a cache hit and replayed
the older prompt's extraction: the run exited 0, cost.json looked cheap, and
the graph silently carried two prompt generations side by side. The reporter
saw 506 of 512 docs replay an older vintage on a rebuild they expected to be
cold; deleting the whole cache was the only workaround.
output, and invalidating them on every release would re-bill extraction for
unchanged files. Fingerprinting the prompt itself keeps both properties:
entries survive releases that don't touch the prompt, and invalidate only
when it actually changed.
Semantic entries now live under cache/semantic/p{fingerprint}/, mirroring the
AST cache's v{version}/ layout. Both extraction paths pass their prompt: the
Python/CLI path from llm.py's _EXTRACTION_SYSTEM (shared by every backend),
and the skill path via a new prompt_file argument in Step B0/B3 naming the
references/extraction-spec.md the subagents were handed. The fingerprint
normalizes line endings so a CRLF checkout isn't mistaken for a new prompt.
Pre-existing entries predate fingerprinting and have unknowable vintage, so
they are still served rather than re-billing a whole corpus on upgrade — but
check_semantic_cache now warns with the count, turning "no signal at all"
into a visible one. merge_existing refuses to fuse such an entry into a
current-vintage write, which would mix two prompts inside one entry and then
attest the result to a prompt that produced half of it.
Old-fingerprint entries are pruned by liveness only, never swept wholesale
the way stale AST versions are: two hosts with different prompts (verbose vs
compact extraction-spec) can share one graphify-out/, and a wholesale sweep
would have each run delete the other's entries and re-bill on every
alternation. prune/clear/cached_files glob recursively so fingerprinted
entries can't become unprunable orphans (the #1527 failure mode).
The two monolith skills (aider, devin) inline their prompt instead of
shipping a spec sidecar and stay on the unfingerprinted path for now.
Step 1's POSIX interpreter probe ran `uv tool run graphifyy python -c ...`,
but the graphifyy package exposes its executable as `graphify`, so uv treated
`python` as a missing `graphifyy` command. The probe failed, and `2>/dev/null`
swallowed uv's "use --from" hint, leaving PYTHON on a system interpreter that
does not have graphify installed. The probe now runs
`uv tool run --from graphifyy python -c ...`.
Applied to the skillgen source fragments (shell/posix.md and the aider/devin
monoliths) and regenerated all skill*.md; added a sanctioned monolith-diff
predicate and re-blessed the expected/ snapshots. The PowerShell path was
already correct (it probes the venv python.exe directly).
Reported and originally patched by @mohammedMsgm in #1736.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
The Usage block's bare `/graphify` comment read "full pipeline on current
directory -> Obsidian vault", contradicting Step 6 (HTML viz always; Obsidian
vault only when --obsidian is explicitly given). The comment predated the
opt-in change and told agents a bare /graphify produces a vault. It now reads
"full pipeline on current directory (HTML viz; add --obsidian for a vault)".
Fixed at the skillgen source (fragments/core/core.md + the aider monolith
override), added a sanctioned-diff predicate so the monolith round-trip guard
allows the change, and re-blessed the expected/ snapshots. Every generated
skill-*.md now carries the corrected comment; the only content change across
all rendered files is this one line.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
#1586: the skill's interpreter-detection allowlist rejected any shebath path
with a char outside [a-zA-Z0-9/_.-], so Homebrew's versioned python@3.13 path
was skipped and detection fell through to a bare python3 without graphify.
Allow @ in the skillgen source fragments (core/devin/aider/posix), regenerate
all skill artifacts, and register the change as a sanctioned monolith diff.
Injection chars (; $ ( etc.) are still rejected.
#1606: graphify merge-graphs crashed with an unhandled NetworkXError when
inputs disagreed on directed/multigraph. _to_simple only converted MultiGraph,
leaving a DiGraph to fail compose. Normalize every input to a plain undirected
Graph (the merged cross-repo view is undirected anyway).
Also confirmed on v8: `graphify kilo install` (#1605) works (reporter was on an
older version), and `pip3 install graphifyy` failing on macOS (#1585) is a
broken Homebrew Python 3.14 / pyexpat env, not a graphify issue — pip crashes
in its own vendored distlib before graphify is touched.
skillgen --check / --monolith-roundtrip / --schema-singleton all green; shell
smoke accepts python@3.13 and still rejects `; rm -rf /` and `$(evil)`. Full
suite 2789.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Hermes and the other AGENTS.md hosts (Codex, Aider, OpenClaw, Droid, Trae, ...)
run the graphify CLI directly and do not dispatch subagents. The Step 3 extraction
guidance only described the no-API-key path as "fall straight through to subagent
dispatch", so on `/graphify .` those agents had no path they could take, fixated on
the GEMINI/ANTHROPIC key language, and looped for minutes insisting on a missing key
before eventually proceeding (a pure-code corpus is AST-only and needs no key at all).
Step 3 now opens with a hoisted, host-agnostic statement -- graphify needs no API
key, never prompt for one, never block on one; code is AST-only; a code-only corpus
skips semantic extraction entirely -- and the no-key fallback now spells out a
terminal-only path (write the empty semantic file and continue, or extract content
inline) instead of assuming subagent dispatch.
Applied in the shared core fragment and in the aider/devin core variants, so all 16
skill bodies carry it; the aider/devin change is registered as a sanctioned
monolith-roundtrip diff. Regression test (test_extraction_states_no_api_key_required_
for_every_host) renders every host and pins the wording, ordering, and the
non-subagent fallback so this can't silently regress.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
`graphify install --platform agents` installs the skill to the generic
Agent-Skills locations: the spec's user-global ~/.agents/skills (global) and
./.agents/skills (--project) — the directories `npx skills` and spec-compliant
frameworks read. `--platform skills` is an alias. Previously that user-global
location was only reachable as an accidental side effect of the gemini-on-Windows
branch. Bare `graphify install` is unchanged (still single-platform claude/windows).
The platform is registered in tools/skillgen/platforms.toml (split, mirroring
amp's agents-md body) and rendered through the skillgen drift/coverage guards.
Since it is a post-v8 platform with no own v8 body, its --audit-coverage baseline
is amp's v8 body (the body it re-homes). The rendered skill body is byte-identical
to amp's; only the on-demand hooks reference differs (its own `graphify agents
install` wording).
The `graphify agents install` / `graphify skills install` subcommand is the
amp-twin: it also wires an AGENTS.md always-on section, keeping it honest with the
hooks reference it points at. The `--platform agents` path stays skill-only,
exactly as amp's `--platform amp` does.
Also: `skill-agents.md` added to package-data, and the wheel-packaging guard now
covers every platform's skill body (not just references/always-on), so a missing
skill body fails CI instead of only breaking install for real users.
Closes#1405. Implements #1432.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
