Safi a7d1969f02 docs: update surprising connections description, test count ...

style: replace all em dashes with hyphens

fix: explain hidden .graphify/ folder in skill output and README

fix: rename .graphify/ to graphify-out/ so output is visible by default

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graphify-out/cache

docs: update surprising connections description, test count

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extraction.json

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sample_calls.py

docs: update surprising connections description, test count

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sample.c

feat: 13-language AST support and token benchmark

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sample.cpp

feat: 13-language AST support and token benchmark

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sample.cs

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sample.go

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sample.java

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sample.kt

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sample.md

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sample.php

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sample.py

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sample.rb

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sample.rs

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sample.scala

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sample.ts

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