safishamsi 5b05f0d9ab fix(cli): disambiguate file labels on the --no-cluster extract path too (#2032) ...

The build_from_json label pass only covered the clustered/update paths; the raw
`extract --no-cluster` path writes the merged node list directly, so colliding
basenames stayed un-disambiguated there. Factor the logic into a shared
_file_label_reassignments core with a list-based variant
(disambiguate_file_labels_in_nodes) and apply it on the raw merged nodes.
Caught by the clean-venv edge-case battery.

2026-07-20 16:35:14 +01:00

..

always_on

fix(skillgen): host-generic /graphify install guidance (#1530)

2026-06-29 10:01:06 +01:00

exporters

fix(export): close stored XSS + broken neighbor links in graph.html (#1838)

2026-07-13 17:48:26 +01:00

extractors

fix(extract): nested types get a contains edge from the enclosing type (#2040)

2026-07-20 15:40:32 +01:00

skills

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

__init__.py

feat: self-improving work-memory — save-result outcomes + graphify reflect (#1441)

2026-06-24 11:43:13 +01:00

__main__.py

fix(cli): wire god-nodes subcommand + accept --output alias on extract (#2004)

2026-07-20 15:35:40 +01:00

_minhash.py

perf/fix: replace datasketch with pure-numpy MinHash; memoize detect ignore checks

2026-06-10 15:50:38 +01:00

affected.py

feat(ruby/affected): mixes_in edges for include/extend/prepend + method-bound callers in affected (#1668, #1669)

2026-07-05 11:41:18 +01:00

analyze.py

fix(build): disambiguate colliding file-node labels for discovery (#2032)

2026-07-20 16:25:11 +01:00

benchmark.py

Honour GRAPHIFY_OUT end-to-end, not just in the path guards (#1423)

2026-06-22 21:15:51 +01:00

build.py

fix(cli): disambiguate file labels on the --no-cluster extract path too (#2032)

2026-07-20 16:35:14 +01:00

cache.py

fix(cache): anchor semantic cache writes to cache_root so --out round-trips (#1990, #1991)

2026-07-18 19:09:53 +01:00

callflow_html.py

Relativize hyperedge source_file and honour GRAPHIFY_OUT everywhere (#1418, #1423)

2026-06-22 17:02:29 +01:00

cargo_introspect.py

fix(cargo): honor package = "..." rename when resolving internal deps (#1858)

2026-07-14 13:19:16 +01:00

cli.py

fix(cli): disambiguate file labels on the --no-cluster extract path too (#2032)

2026-07-20 16:35:14 +01:00

cluster.py

fix(cluster): detect stale community labels on cluster-only re-cluster

2026-07-01 11:52:50 +01:00

command-kilo.md

feat: add Kilo Code support (#512)

2026-06-01 16:05:07 +01:00

dedup.py

fix(dedup): deterministic collision survivor + bare-file definer (#1851 followup)

2026-07-14 13:51:42 +01:00

detect.py

fix(detect): stop silent data loss from env-dir pruning and absolute-path sidecars (#2058, #2059)

2026-07-20 15:28:59 +01:00

diagnostics.py

fix(llm): move the unverifiable-node flag to a real, consumed field (follow-up to #1949)

2026-07-17 00:09:02 +01:00

export.py

fix(io): write graph.json and manifest.json atomically

2026-07-16 23:42:47 +01:00

extract.py

fix(detect): stop silent data loss from env-dir pruning and absolute-path sidecars (#2058, #2059)

2026-07-20 15:28:59 +01:00

file_slice.py

Slice oversized text documents so the whole file is extracted (#1369)

2026-06-18 01:55:56 +01:00

global_graph.py

fix(io): route the remaining graph/manifest writers through the atomic helper (follow-up to #1952)

2026-07-16 23:48:07 +01:00

google_workspace.py

fix(detect): stop silent data loss from env-dir pruning and absolute-path sidecars (#2058, #2059)

2026-07-20 15:28:59 +01:00

hooks.py

Fix spurious hooksPath warning and register graph.json merge driver

2026-07-15 00:41:36 +01:00

ids.py

Unify node-ID normalization into a single source of truth (#1378)

2026-06-18 22:55:44 +01:00

ingest.py

feat: self-improving work-memory — save-result outcomes + graphify reflect (#1441)

2026-06-24 11:43:13 +01:00

install.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

llm.py

fix(llm): OLLAMA_HOST fallback in detect_backend + default port (follow-up to #2019)

2026-07-20 11:41:43 +01:00

manifest_ingest.py

Parse package manifests into canonical package nodes + depends_on edges (#1377)

2026-06-19 10:25:09 +01:00

manifest.py

…

mcp_ingest.py

fix(ids): node IDs include the full repo-relative path (#1504, #1509)

2026-06-28 16:57:00 +01:00

multigraph_compat.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

pascal_resolution.py

fix(extract): scope Pascal/Delphi call resolution + resolve inherited calls across files (#1739)

2026-07-09 00:32:21 +01:00

paths.py

fix(io): route the remaining graph/manifest writers through the atomic helper (follow-up to #1952)

2026-07-16 23:48:07 +01:00

pg_introspect.py

fix(pg_introspect): emit FK DDL before function stubs so unparseable routines can't drop references edges (#1854)

2026-07-16 16:36:49 +01:00

prs.py

fix(prs): decode gh/git/claude output as UTF-8, not the Windows cp1252 codec

2026-07-18 12:03:47 +01:00

querylog.py

fix(querylog): make the query log opt-in, off by default (#1797)

2026-07-12 10:36:00 +01:00

reflect.py

fix(reflect): layout-ordered source resolution for overlay staleness (#1558)

2026-06-30 12:57:33 +01:00

report.py

fix(report): don't emit dangling [[_COMMUNITY_*]] wikilinks by default (#1712)

2026-07-07 10:57:52 +01:00

resolver_registry.py

feat(ruby): type-aware member-call resolution via a resolver framework (#1499)

2026-06-29 09:40:22 +01:00

ruby_resolution.py

fix(extract): route .rake files to the Ruby extractor + resolution (#1784)

2026-07-11 11:31:47 +01:00

scip_ingest.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

security.py

test(security): cover GRAPHIFY_MAX_GRAPH_BYTES parsing; clarify unit docstring

2026-07-08 01:03:28 +01:00

semantic_cleanup.py

fix(merge-chunks): validate untrusted subagent chunk JSON before merging

2026-07-16 23:36:49 +01:00

serve.py

fix(build): disambiguate colliding file-node labels for discovery (#2032)

2026-07-20 16:25:11 +01:00

skill-agents.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-aider.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-amp.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-claw.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-codex.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-copilot.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-devin.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-droid.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-kilo.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-kiro.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-opencode.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-pi.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-trae.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-vscode.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill-windows.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

skill.md

fix(skillgen): stamp only produced-output files in the update runbook (#2015)

2026-07-20 13:30:26 +01:00

symbol_resolution.py

fix(resolve): test mocks no longer erase the real cross-file call graph (#1553)

2026-06-30 16:59:16 +01:00

transcribe.py

Honour GRAPHIFY_OUT end-to-end, not just in the path guards (#1423)

2026-06-22 21:15:51 +01:00

tree_html.py

fix(build): disambiguate colliding file-node labels for discovery (#2032)

2026-07-20 16:25:11 +01:00

validate.py

Fix: validate_extraction crashes on non-hashable node id / edge endpoint

2026-06-24 08:54:11 +01:00

watch.py

fix(watch): don't evict remote-source nodes after URL slash-collapse (#2051 follow-up)

2026-07-20 13:57:12 +01:00

wiki.py

fix(wiki): portable relative markdown links so navigation works outside Obsidian (#1444)

2026-06-27 10:19:15 +01:00