Deepanshu Pal 68e0e9bbac fix(skill): preserve persisted scan options across skill runs ...

Read existing CLI build-config options in fresh and incremental skill
scan fragments, keeping corpus boundaries consistent without changing
standalone detection API defaults. Regenerate all host artifacts and
snapshots. Add rendered-snippet regressions and explicit-override tests.

Fixes #4240.
AI-Assisted-By: AI coding assistant

(cherry picked from commit 3f68952d80)

2026-10-09 19:17:53 +01:00

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fixtures

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__init__.py

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bench_extract.py

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bench_query_scoring.py

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conftest.py

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test_affected_cli.py

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test_affected_member_seed.py

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test_agents_platform.py

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test_analyze.py

fix(cluster,analyze,report): isolate AMBIGUOUS edges from top-N and modularity

2026-10-08 14:27:06 +01:00

test_anthropic_custom_endpoint.py

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test_antigravity_install.py

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test_apm_fallback_version.py

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test_architecture_doc.py

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test_astro_extraction.py

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test_astro_import_ids.py

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test_atomic_canvas_export.py

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test_atomic_version_stamp.py

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test_atomic_writes.py

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test_backend_env_isolation.py

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test_backend_extras.py

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test_benchmark_raw_graph.py

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test_benchmark.py

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test_blade_extractor.py

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test_build_located_semantic_identity.py

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test_build_merge_dedup_scope.py

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test_build_merge_hyperedges_and_prune.py

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test_build_merge_shrink_guard.py

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test_build.py

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test_builtin_global_type_refs.py

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test_cache_stale_import_target.py

fix(cache): treat an AST hit whose import target is gone as a miss

2026-10-07 17:26:00 +01:00

test_cache.py

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test_callflow_html.py

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test_cargo_introspect.py

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test_cargo_missing_manifest.py

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test_carried_hyperedge_remap.py

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test_case_sensitive_resolution.py

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test_charmap_encoding.py

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test_chunking.py

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test_cjs_module_extension.py

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test_claude_cli_backend.py

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test_claude_md.py

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test_cli_broken_pipe.py

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test_cli_export.py

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test_cli_help.py

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test_cloud_cta.py

feat(cli): nudge toward Graphify Cloud once after a local graph build

2026-10-09 02:48:22 +01:00

test_cluster_ambiguous_scale.py

fix(cluster,analyze,report): isolate AMBIGUOUS edges from top-N and modularity

2026-10-08 14:27:06 +01:00

test_cluster_exclude_hubs.py

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test_cluster.py

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test_cobol_extractor.py

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test_codebuddy.py

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test_community_hub_labels.py

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test_community_labels_skill.py

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test_confidence.py

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test_corrupt_graph_json.py

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test_cpp_method_declarations.py

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test_cpp_nested_and_cli.py

fix(extract): preserve C++ classes behind export macros (#3661, #3648)

2026-10-06 20:54:55 +01:00

test_cpp_objc_cross_file_calls.py

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test_cpp_preprocess.py

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test_cross_extension_reexport_self_cycle.py

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test_cross_language_call_resolution.py

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test_cross_repo_external_call_guards.py

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test_cross_repo_member_calls.py

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test_cross_repo_shared_types.py

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test_csharp_call_site_generic_args.py

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test_csharp_enum_members.py

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test_csharp_field_generic_args.py

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test_csharp_generic_callsites.py

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test_csharp_interface_dispatch.py

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test_csharp_member_calls.py

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test_csharp_member_nodes.py

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test_csharp_object_creation.py

fix(build): keep a method edge when a member constructs its own type

2026-10-09 19:17:53 +01:00

test_csharp_partial_classes.py

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test_csharp_tuple_type_refs.py

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test_csharp_type_resolution.py

fix(csharp): resolve enclosing namespace types

2026-10-08 14:28:03 +01:00

test_dart.py

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test_dedup_remaps_hyperedges.py

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test_dedup_shrink_refuses_force_write.py

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test_dedup_survivor_richness.py

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test_dedup.py

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test_definition_file_portability.py

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test_detect.py

fix(detect): drop a previous checkout's absolute manifest keys (#4175)

2026-10-07 17:26:11 +01:00

test_devin.py

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test_docx_to_markdown.py

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test_dotnet.py

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test_duplicate_annotation_edges.py

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test_elixir_import_resolution.py

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test_elixir_keyword_def_calls.py

fix(elixir): emit calls edges for keyword-form def bodies

2026-10-08 14:28:54 +01:00

test_elixir_qualified_calls.py

fix(elixir): resolve qualified and aliased remote calls (#4206)

2026-10-08 14:28:27 +01:00

test_elixir_unqualified_call_scope.py

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test_erlang_extractor.py

test: skip optional-extra tests when the extra is not installed (#4190)

2026-10-07 17:26:00 +01:00

test_evidence_binding.py

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test_explain_cli.py

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test_export_control_characters.py

fix(export): strip control characters from the id drawn for an unlabelled node

2026-10-09 02:51:03 +01:00

test_export_direction.py

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test_export_idempotent_writes.py

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test_export_path_length.py

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test_export.py

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test_external_stub_endpoints.py

fix(watch): drop an external import stub once no edge references it

2026-10-07 17:26:17 +01:00

test_extract_cache_location.py

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test_extract_cli.py

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test_extract_code_only_cli.py

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test_extract_path_memo.py

perf(extract): resolve and parse each path once in the id remap and call tie-break

2026-10-07 17:52:47 +01:00

test_extract_php_closures.py

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test_extract.py

fix(python): resolve self.<attr>.<method>() calls through the attribute's constructor type (#2860)

2026-10-07 17:26:11 +01:00

test_extraction_spec_ids.py

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test_extractors_registry.py

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test_falkordb_integration.py

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test_file_label_disambiguation.py

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test_file_node_id_spec.py

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test_file_slice.py

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test_file_truncation_warning.py

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test_forwarding_review_findings.py

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test_gemini_hook.py

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test_global_add_tag_inference.py

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test_global_graph.py

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test_go_builtin_call_targets.py

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test_go_import_repoint.py

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test_go_interface_methods.py

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test_go_qualified_resolution.py

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test_god_nodes_cli.py

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test_god_nodes_exclude_hubs.py

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test_google_workspace.py

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test_graph_invariance.py

test: pin graph.json invariance across checkout folder, rebuild and line endings

2026-10-08 14:27:06 +01:00

test_graphdb_push_indexes.py

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test_hollow_chunks_arm_shrink_guard.py

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test_home_sandbox.py

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test_hook_chain_survives_skip.py

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test_hook_guard_token_match.py

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test_hook_guard.py

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test_hook_out_of_project_paths.py

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test_hook_strict.py

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test_hooks.py

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test_hyperedge_member_shapes.py

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test_hyperedge_roundtrip.py

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test_hypergraph.py

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test_id_normalization_contract.py

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test_ignore_file_encoding.py

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test_image_vision.py

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test_import_extension_resolution.py

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test_import_self_loops.py

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test_imported_export_forwarding.py

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test_incomplete_build_guard.py

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test_incremental_mtime_collision.py

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test_incremental_unscanned_placeholders.py

fix(watch): keep placeholder nodes for never-scanned files on incremental rebuilds (#4161, #4160)

2026-10-06 20:54:35 +01:00

test_incremental.py

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test_indirect_call_arrow_single_param_shadow.py

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test_indirect_call_block_scoped_shadow.py

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test_indirect_call_catch_binding_shadow.py

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test_indirect_call_external_import_shadow.py

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test_indirect_call_for_of_binding_shadow.py

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test_indirect_call_function_expression_shadow.py

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test_indirect_call_nested_closure_shadow.py

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test_indirect_dispatch_assign_return.py

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test_indirect_dispatch_getattr.py

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test_indirect_dispatch.py

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test_inferred_confidence_rubric.py

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test_ingest_url_type.py

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test_ingest.py

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test_inherited_field_receivers.py

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test_injection_sentinel_coverage.py

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test_install_references.py

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test_install_roundtrip.py

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test_install_strings.py

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test_install_upgrade.py

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test_install_version_stamp.py

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test_install_version_warning.py

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test_install.py

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test_issue_3405_python_resolution.py

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test_issue_3472_source_file_collision.py

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test_java_anonymous_class.py

fix(java): capture methods and calls inside anonymous class bodies

2026-10-07 17:26:00 +01:00

test_java_enum_members.py

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test_java_member_calls.py

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test_java_type_resolution.py

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test_js_callback_calls.py

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test_js_destructured_export.py

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test_js_dynamic_import_affected.py

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test_js_dynamic_imports.py

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test_js_exported_fn_call_resolution.py

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test_js_exported_scalar_bindings.py

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test_js_import_resolution.py

fix(extract): make unresolved re-export IDs portable

2026-10-09 19:17:53 +01:00

test_js_module_level_anonymous_calls.py

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test_js_this_member_expressions.py

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test_jsconfig_baseurl.py

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test_json_schema_config.py

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test_jsx_component_usage_calls.py

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test_kotlin_grammar.py

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test_kotlin_object_literal.py

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test_label_retry.py

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test_labeling.py

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test_language_resolvers.py

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test_languages.py

fix(markdown): resolve links to file names that contain a space

2026-10-07 17:26:00 +01:00

test_llm_backends.py

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test_llm_parser_reasoning.py

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test_llm_parser.py

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test_long_path_hashing.py

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test_loose_sibling_import_resolution.py

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test_lua_import.py

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test_lua_method_calls.py

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test_manifest_ingest.py

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test_manifest_tomli_required.py

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test_markdown_code_spans.py

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test_mcp_graph_view_cache.py

perf(serve): build the MCP traversal view and shortest-path graphs once per graph

2026-10-07 17:26:00 +01:00

test_mcp_ingest.py

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test_merge_chunks_validation.py

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test_merge_graphs_cli.py

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test_minhash.py

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test_multigraph_compat.py

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test_multigraph_diagnostics.py

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test_multilang.py

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test_no_cluster_run_only_keys.py

fix(watch): keep extract()'s run-only keys out of --no-cluster graph.json

2026-10-07 17:26:17 +01:00

test_no_cluster_undeclared_endpoints.py

fix(build): give --no-cluster graph.json the same endpoint rules as build_from_json

2026-10-07 17:26:17 +01:00

test_no_dedup_flag.py

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test_node_id_canonical.py

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test_non_regular_files.py

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test_non_string_node_ids.py

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test_objc_category_interfaces.py

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test_objc_enum_declarations.py

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test_objc_field_table_remap.py

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test_objc_member_calls.py

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test_objc_property_ivar_receivers.py

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test_obsidian_dangling_member.py

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test_obsidian_filename_cap.py

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test_obsidian_unicode_tags.py

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test_obsidian_vault_migration.py

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test_ocaml.py

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test_office_incremental.py

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test_office_limits.py

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test_ollama_retry_cap.py

test: skip optional-extra tests when the extra is not installed (#4190)

2026-10-07 17:26:00 +01:00

test_ollama.py

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test_openai_custom_endpoint.py

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test_out_dir_evidence.py

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test_oversized_document_slicing.py

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test_owned_type_sources.py

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test_package_json_subpath_imports.py

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test_partial_cache.py

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test_partial_extraction_warning.py

fix(extract): preserve cross-drive syntax warnings

2026-10-07 17:26:00 +01:00

test_pascal_call_scoping.py

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test_pascal_resolution.py

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test_pascal.py

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test_path_cli.py

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test_paths.py

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test_pdf_extra_warning.py

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test_pdf_slicing.py

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test_pdf_token_estimate.py

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test_pg_introspect.py

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test_phantom_cross_package_call.py

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test_phantom_external_import.py

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test_php_language_construct_calls.py

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test_php_object_creation.py

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test_php_type_resolution.py

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test_php_unparsed_casts.py

fix(php): parse PHP 8.5 (void) casts and casted match expressions (#4202)

2026-10-08 14:27:06 +01:00

test_pin_hash_seed.py

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test_pipeline.py

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test_provider_registry.py

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test_prs.py

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test_prune_sweeps_orphans.py

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test_python_decorators.py

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test_python_import_never_resolves_to_itself.py

fix(python): never resolve an absolute import to the module that contains it (#4225)

2026-10-08 14:28:20 +01:00

test_python_import_resolution.py

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test_python_inherited_method_calls.py

feat(python): resolve self/cls/super() calls to a base-class method in another file

2026-10-08 14:29:00 +01:00

test_python_nested_class_identity.py

fix(python): preserve nested class identities by enclosing class

2026-10-08 14:29:19 +01:00

test_python_parse_memoization.py

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test_python_typed_receiver_calls.py

fix(python): find a nested function's file in the typed-receiver visibility check

2026-10-08 14:28:54 +01:00

test_python_underscore_resolution.py

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test_query_cli.py

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test_query_induced_edges.py

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test_query_mcp_direction.py

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test_query_names_its_graph.py

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test_querylog.py

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test_r_extractor.py

test: skip optional-extra tests when the extra is not installed (#4190)

2026-10-07 17:26:00 +01:00

test_rationale.py

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test_read_hook.py

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test_reflect.py

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test_relation_collapse_precedence.py

fix(build): keep a method edge when a member constructs its own type

2026-10-09 19:17:53 +01:00

test_replace_or_append_section.py

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test_report_gap_thresholds.py

fix(analyze): exclude contains-only AST declarations from knowledge gap detection (#4205)

2026-10-08 14:27:06 +01:00

test_report.py

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test_resolve_memoization.py

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test_ruby_bare_self_send_calls.py

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test_ruby_resolution.py

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test_rust_anonymous_const.py

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test_rust_builtin_type_hubs.py

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test_rust_in_file_call_binding.py

fix(rust): bind an in-file call to the type it names, not to any same-named function

2026-10-09 02:48:23 +01:00

test_rust_macro_rules.py

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test_rust_self_member_calls.py

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test_scala_abstract_methods.py

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test_scala_context_bounds.py

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test_scala_self_type.py

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test_scala_top_level_binding.py

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test_scala_type_definition.py

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test_scip_ingest.py

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test_search_hook.py

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test_security.py

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test_semantic_cache_basename_recovery.py

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test_semantic_cache_out_root.py

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test_semantic_cleanup.py

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test_semantic_fragment_sanitize.py

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test_semantic_id_remap_root.py

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test_semantic_similarity.py

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test_serve_http.py

fix(serve): show the graph's build commit in graph_stats

2026-10-07 17:26:00 +01:00

test_serve.py

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test_settings_merge.py

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test_skill_auto_refresh.py

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test_skill_persisted_scan_options.py

fix(skill): preserve persisted scan options across skill runs

2026-10-09 19:17:53 +01:00

test_skill_semantic_all_cached.py

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test_skill_version_warning.py

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test_skillgen_input_path_injection.py

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test_skillgen.py

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test_solidity_extractor.py

test: skip optional-extra tests when the extra is not installed (#4190)

2026-10-07 17:26:00 +01:00

test_source_file_encoding.py

test: skip optional-extra tests when the extra is not installed (#4190)

2026-10-07 17:26:00 +01:00

test_source_key_memoization.py

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test_sourceless_call_targets.py

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test_src_layout_import_resolution.py

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test_stale_prune.py

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test_stat_index_husk.py

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test_stat_index_multi_root.py

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test_stat_index_portability.py

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test_suggest_questions_ambiguous.py

fix(cluster,analyze,report): isolate AMBIGUOUS edges from top-N and modularity

2026-10-08 14:27:06 +01:00

test_svelte_extraction.py

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test_swift_builtin_noise.py

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test_swift_computed_properties.py

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test_swift_cross_file_calls.py

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test_swift_import_resolution.py

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test_swift_protocol_dispatch.py

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test_swift_protocol_requirements.py

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test_symbol_resolution.py

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test_terraform_modules.py

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test_terraform.py

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test_trailing_newline_not_a_syntax_error.py

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test_transcribe.py

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test_tree_html.py

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test_ts_abstract_methods.py

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test_ts_decorators.py

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test_ts_generators.py

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test_ts_import_require.py

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test_ts_import_type_arguments.py

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test_ts_inheritance.py

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test_ts_namespace.py

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test_ts_new_expression_calls.py

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test_ts_parse_warning.py

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test_ts_receiver_member_calls.py

fix(ts): pick a same-named receiver type by the caller's import, never bind to a #private method

2026-10-08 14:27:33 +01:00

test_type_only_import_cycles.py

fix(python): keep TYPE_CHECKING-only imports out of import cycles (#3159)

2026-10-07 17:26:11 +01:00

test_typescript_enum_members.py

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test_typescript_module_extensions.py

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test_uninstall_scope.py

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test_uninstall_symlink.py

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test_unmapped_at_alias_resolution.py

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test_unverified_semantic_shrink.py

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test_validate.py

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test_vbnet_extractor.py

test: skip optional-extra tests when the extra is not installed (#4190)

2026-10-07 17:26:00 +01:00

test_vue_extraction.py

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test_walk_python_tree_iterative.py

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test_watch_identity_cache.py

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test_watch_manifest_location.py

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test_watch.py

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test_wheel_packaging.py

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test_wiki_link_filename_parity.py

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test_wiki_truncation_indicator.py

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test_wiki.py

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test_word_count_cache.py

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test_zero_node_no_cache.py

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