berce ffaf5c820d fix(markdown): resolve wikilinks that start with the scan root's own folders (#4559) ...

Obsidian writes wikilink paths from the vault root, so scanning a folder
below it meets links like [[Corp/wiki/Fox]] from inside Corp/. The
vault-wide fallback matched them as suffixes of root-relative paths,
which never succeeds, and the references edge was dropped. When nothing
matches, drop the longest leading run of the scan root's own folders
and match the rest exactly from the root.

2026-10-20 11:28:04 +01:00

..

fixtures

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__init__.py

…

bench_extract.py

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bench_query_scoring.py

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conftest.py

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pi.test.ts

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test_affected_cli.py

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test_affected_defines.py

…

test_affected_member_seed.py

…

test_affected_overrides.py

…

test_agents_platform.py

…

test_alias_folding.py

fix(build): fold node confidence the same way as edges and hyperedges (#4529)

2026-10-20 10:35:23 +01:00

test_analyze.py

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test_anthropic_custom_endpoint.py

…

test_antigravity_install.py

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test_apm_fallback_version.py

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test_architecture_doc.py

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test_astro_extraction.py

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test_astro_import_ids.py

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test_atomic_canvas_export.py

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test_atomic_version_stamp.py

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test_atomic_writes.py

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test_backend_env_isolation.py

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test_backend_extras.py

…

test_backend_opt_in.py

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test_benchmark_raw_graph.py

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test_benchmark_real_query.py

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test_benchmark.py

…

test_blade_extractor.py

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test_build_located_semantic_identity.py

…

test_build_merge_dedup_scope.py

…

test_build_merge_hyperedges_and_prune.py

…

test_build_merge_shrink_guard.py

…

test_build.py

fix(mcp): preserve parallel edges through graph.json round-trip and MCP output

2026-10-16 18:25:28 +01:00

test_builtin_global_type_refs.py

…

test_c_include_resolution.py

…

test_cache_stale_import_target.py

…

test_cache.py

…

test_callflow_html.py

…

test_cargo_introspect.py

…

test_cargo_missing_manifest.py

…

test_carried_hyperedge_remap.py

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test_case_sensitive_resolution.py

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test_charmap_encoding.py

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test_chunking.py

…

test_cjs_module_extension.py

…

test_claude_cli_backend.py

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test_claude_md.py

…

test_cli_broken_pipe.py

…

test_cli_export.py

fix(mcp): preserve parallel edges through graph.json round-trip and MCP output

2026-10-16 18:25:28 +01:00

test_cli_help.py

…

test_cloud_cta.py

…

test_cluster_ambiguous_scale.py

…

test_cluster_exclude_hubs.py

…

test_cluster.py

…

test_cobol_extractor.py

…

test_code_only_update_all_hosts.py

test(skill): keep graphify off PATH and satisfy pyright in the update test

2026-10-16 17:14:07 +01:00

test_codebuddy.py

…

test_community_hub_labels.py

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test_community_labels_skill.py

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test_compact_graph_json.py

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test_confidence.py

…

test_corrupt_graph_json.py

…

test_cpp_method_declarations.py

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test_cpp_nested_and_cli.py

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test_cpp_objc_cross_file_calls.py

…

test_cpp_preprocess.py

…

test_cpp_template_type_params.py

…

test_cross_extension_reexport_self_cycle.py

…

test_cross_language_call_resolution.py

…

test_cross_repo_external_call_guards.py

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test_cross_repo_member_calls.py

…

test_cross_repo_shared_types.py

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test_csharp_call_site_generic_args.py

…

test_csharp_delegate_declarations.py

fix(csharp): extract delegate declarations so references don't mint sourceless stubs

2026-10-20 10:35:24 +01:00

test_csharp_enum_members.py

…

test_csharp_field_generic_args.py

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test_csharp_foreach_loop_variable.py

…

test_csharp_generic_callsites.py

…

test_csharp_interface_dispatch.py

…

test_csharp_member_calls.py

…

test_csharp_member_chain_calls.py

…

test_csharp_member_nodes.py

…

test_csharp_object_creation.py

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test_csharp_partial_classes.py

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test_csharp_tuple_type_refs.py

…

test_csharp_type_resolution.py

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test_csharp_underscore_collisions.py

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test_csharp_var_call_return_type.py

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test_csharp_verbatim_interpolation.py

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test_dart.py

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test_dedup_remaps_hyperedges.py

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test_dedup_shrink_refuses_force_write.py

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test_dedup_survivor_richness.py

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test_dedup.py

Add a regression test for the source less collision survivor

2026-10-16 18:21:28 +01:00

test_definition_file_portability.py

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test_detect_jinja.py

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test_detect.py

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test_devin.py

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test_docx_to_markdown.py

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test_dotnet.py

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test_duplicate_annotation_edges.py

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test_ejs_extractor.py

…

test_elixir_defdelegate.py

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test_elixir_import_resolution.py

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test_elixir_keyword_def_calls.py

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test_elixir_qualified_calls.py

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test_elixir_unqualified_call_scope.py

…

test_erlang_extractor.py

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test_evidence_binding.py

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test_explain_cli.py

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test_explain_same_file_tie.py

…

test_export_control_characters.py

…

test_export_direction.py

…

test_export_idempotent_writes.py

…

test_export_path_length.py

…

test_export.py

fix(export): export GraphML from a graph loaded as a MultiGraph

2026-10-20 10:50:37 +01:00

test_ext_tagged_id_clash.py

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test_external_stub_endpoints.py

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test_extract_cache_location.py

…

test_extract_cli.py

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test_extract_code_only_cli.py

…

test_extract_path_memo.py

…

test_extract_php_closures.py

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test_extract.py

…

test_extraction_spec_ids.py

…

test_extractor_scan_root_context.py

fix(extractors): share the in-flight scan root via base, not graphify.extract (#3666)

2026-10-16 18:21:28 +01:00

test_extractors_registry.py

…

test_falkordb_integration.py

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test_file_label_disambiguation.py

…

test_file_node_id_spec.py

…

test_file_slice.py

…

test_file_truncation_warning.py

…

test_forwarding_review_findings.py

…

test_gemini_hook.py

…

test_git_head_stdin.py

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test_global_add_tag_inference.py

…

test_global_graph.py

…

test_go_builtin_call_targets.py

…

test_go_generic_receiver_methods.py

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test_go_generic_type_params.py

…

test_go_import_repoint.py

…

test_go_interface_methods.py

…

test_go_package_type_fold.py

…

test_go_qualified_resolution.py

test: pin in-file calls to salted Rust functions and Go ids outside a collision group

2026-10-16 17:12:53 +01:00

test_go_receiver_member_calls.py

…

test_god_nodes_cli.py

…

test_god_nodes_exclude_hubs.py

…

test_google_workspace.py

…

test_grammar_cache_key.py

…

test_graph_invariance.py

…

test_graphdb_push_indexes.py

…

test_hollow_chunks_arm_shrink_guard.py

…

test_home_sandbox.py

…

test_hook_chain_survives_skip.py

…

test_hook_guard_token_match.py

…

test_hook_guard.py

…

test_hook_out_of_project_paths.py

…

test_hook_strict.py

…

test_hooks_rewrite.py

…

test_hooks.py

…

test_html_script_breakout.py

…

test_html_theme.py

…

test_hyperedge_member_shapes.py

…

test_hyperedge_roundtrip.py

…

test_hypergraph.py

…

test_id_normalization_contract.py

…

test_ignore_file_encoding.py

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test_image_vision.py

…

test_import_extension_resolution.py

…

test_import_self_loops.py

…

test_imported_export_forwarding.py

…

test_incomplete_build_guard.py

…

test_incremental_mtime_collision.py

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test_incremental_unscanned_placeholders.py

…

test_incremental.py

…

test_indirect_call_arrow_single_param_shadow.py

…

test_indirect_call_block_scoped_shadow.py

…

test_indirect_call_catch_binding_shadow.py

…

test_indirect_call_external_import_shadow.py

…

test_indirect_call_file_scope_callback_shadow.py

…

test_indirect_call_for_of_binding_shadow.py

…

test_indirect_call_function_expression_shadow.py

…

test_indirect_call_nested_closure_shadow.py

…

test_indirect_dispatch_assign_return.py

…

test_indirect_dispatch_getattr.py

…

test_indirect_dispatch.py

…

test_inferred_confidence_rubric.py

…

test_ingest_url_type.py

…

test_ingest.py

…

test_inherited_field_receivers.py

…

test_injection_sentinel_coverage.py

…

test_install_hook_identity.py

…

test_install_line_endings.py

…

test_install_references.py

…

test_install_roundtrip.py

…

test_install_strings.py

…

test_install_upgrade.py

…

test_install_version_stamp.py

…

test_install_version_warning.py

…

test_install.py

…

test_issue_3405_python_resolution.py

…

test_issue_3472_source_file_collision.py

…

test_java_anonymous_class.py

…

test_java_enum_members.py

…

test_java_member_calls.py

…

test_java_type_resolution.py

…

test_js_callback_calls.py

…

test_js_destructured_export.py

…

test_js_dynamic_import_affected.py

…

test_js_dynamic_imports.py

…

test_js_exported_fn_call_resolution.py

…

test_js_exported_scalar_bindings.py

…

test_js_import_resolution.py

…

test_js_member_collisions.py

…

test_js_module_level_anonymous_calls.py

…

test_js_this_member_expressions.py

…

test_js_walk_order.py

…

test_jsconfig_baseurl.py

…

test_json_schema_config.py

…

test_jsx_component_usage_calls.py

…

test_kotlin_generic_type_params.py

…

test_kotlin_grammar.py

…

test_kotlin_object_literal.py

…

test_kotlin_typealias_declarations.py

fix(kotlin): extract typealias declarations so references don't mint sourceless stubs

2026-10-20 10:35:23 +01:00

test_label_retry.py

…

test_labeling.py

fix(llm): decode JSON escapes in community labels salvaged from a truncated reply

2026-10-20 10:35:22 +01:00

test_language_override_imports.py

…

test_language_override_lifecycle.py

…

test_language_overrides.py

fix(rcfile): read .graphifyrc with utf-8-sig so a BOM doesn't drop the first key

2026-10-20 10:35:22 +01:00

test_language_resolvers.py

…

test_languages.py

fix(markdown): resolve wikilinks that start with the scan root's own folders (#4559)

2026-10-20 11:28:04 +01:00

test_llm_backends.py

…

test_llm_null_token_counts.py

…

test_llm_parser_reasoning.py

…

test_llm_parser.py

…

test_long_path_hashing.py

…

test_lookup_exit_codes.py

…

test_loose_sibling_import_resolution.py

…

test_lost_saved_semantic_nodes.py

…

test_lua_import.py

…

test_lua_method_calls.py

…

test_manifest_ingest.py

…

test_manifest_tomli_required.py

…

test_markdown_code_spans.py

…

test_mcp_graph_view_cache.py

…

test_mcp_ingest.py

…

test_merge_chunks_validation.py

…

test_merge_graphs_cli.py

…

test_merge_sweeps_reextract_orphans.py

…

test_minhash.py

…

test_multigraph_compat.py

…

test_multigraph_diagnostics.py

…

test_multilang.py

fix(rust): resolve a forward reference to a type that keeps its id beside a case-only sibling

2026-10-16 17:12:53 +01:00

test_no_cluster_run_only_keys.py

…

test_no_cluster_undeclared_endpoints.py

…

test_no_dedup_flag.py

…

test_node_id_canonical.py

…

test_non_regular_files.py

…

test_non_string_node_ids.py

…

test_objc_callable_markers.py

…

test_objc_category_interfaces.py

…

test_objc_enum_declarations.py

…

test_objc_field_table_remap.py

…

test_objc_member_calls.py

…

test_objc_property_ivar_receivers.py

…

test_obsidian_dangling_member.py

…

test_obsidian_filename_cap.py

…

test_obsidian_unicode_tags.py

…

test_obsidian_vault_migration.py

…

test_ocaml.py

…

test_office_incremental.py

…

test_office_limits.py

…

test_ollama_native_chat.py

…

test_ollama_retry_cap.py

…

test_ollama.py

…

test_openai_custom_endpoint.py

…

test_opencode_plugin_refresh.py

fix(cli): leave installed skills alone on version and help (#4545)

2026-10-20 11:28:03 +01:00

test_out_dir_evidence.py

…

test_oversized_document_slicing.py

…

test_owned_type_sources.py

…

test_package_json_subpath_imports.py

…

test_partial_cache.py

…

test_partial_extraction_warning.py

…

test_pascal_call_scoping.py

…

test_pascal_resolution.py

…

test_pascal.py

…

test_path_cli.py

…

test_paths.py

…

test_pdf_extra_warning.py

…

test_pdf_slicing.py

…

test_pdf_token_estimate.py

…

test_pg_introspect.py

…

test_phantom_cross_package_call.py

…

test_phantom_external_import.py

…

test_php_language_construct_calls.py

…

test_php_object_creation.py

…

test_php_receiver_member_calls.py

…

test_php_static_call_resolution.py

…

test_php_type_resolution.py

…

test_php_unparsed_casts.py

…

test_pi_guard_install.py

…

test_pin_hash_seed.py

…

test_pipeline.py

…

test_pr10_csharp_overrides.py

…

test_pr10_resolution_overrides.py

…

test_pr10_watch_overrides.py

…

test_provider_registry.py

…

test_prs.py

fix(prs): read StatusContext state when classifying CI

2026-10-20 10:50:36 +01:00

test_prune_sweeps_orphans.py

…

test_python_decorators.py

…

test_python_forward_ref_file_id.py

…

test_python_import_never_resolves_to_itself.py

…

test_python_import_resolution.py

…

test_python_inherited_method_calls.py

…

test_python_module_call_exact_name.py

test(python): module-call exact-name tests, incl. a cross-module negative

2026-10-20 10:55:51 +01:00

test_python_nested_class_identity.py

…

test_python_parse_memoization.py

…

test_python_property_reads.py

…

test_python_pytest_fixture_receivers.py

…

test_python_reexport_type_binding.py

…

test_python_self_type_ref.py

…

test_python_typed_receiver_calls.py

…

test_python_underscore_resolution.py

…

test_qualified_annotation_stub_bind.py

…

test_query_cli.py

…

test_query_fallback_edges.py

…

test_query_induced_edges.py

…

test_query_mcp_direction.py

…

test_query_names_its_graph.py

…

test_query_seed_order.py

…

test_query_seeds.py

…

test_querylog.py

…

test_r_extractor.py

…

test_rationale.py

fix(extract): redact credential-shaped text from rationale labels

2026-10-20 10:53:04 +01:00

test_read_hook.py

…

test_reflect.py

…

test_relation_collapse_precedence.py

…

test_replace_or_append_section.py

…

test_report_gap_thresholds.py

…

test_report.py

…

test_resolve_memoization.py

…

test_ruby_bare_self_send_calls.py

…

test_ruby_resolution.py

…

test_rust_anonymous_const.py

…

test_rust_builtin_type_hubs.py

…

test_rust_case_collisions.py

test: pin in-file calls to salted Rust functions and Go ids outside a collision group

2026-10-16 17:12:53 +01:00

test_rust_in_file_call_binding.py

…

test_rust_macro_rules.py

…

test_rust_self_member_calls.py

…

test_rust_use_trees.py

test: a Rust use rooted at a child mod reaches its declaration (#4564)

2026-10-20 10:35:37 +01:00

test_scala_abstract_methods.py

…

test_scala_context_bounds.py

…

test_scala_generic_type_params.py

…

test_scala_given_instances.py

…

test_scala_self_type.py

…

test_scala_top_level_binding.py

…

test_scala_type_definition.py

…

test_scip_ingest.py

…

test_search_hook.py

…

test_security.py

fix(extract): also redact opaque Bearer tokens; guard against over-redaction

2026-10-20 10:54:35 +01:00

test_semantic_cache_basename_recovery.py

…

test_semantic_cache_out_root.py

…

test_semantic_cleanup.py

…

test_semantic_fragment_sanitize.py

…

test_semantic_id_remap_root.py

…

test_semantic_origin_stamp.py

…

test_semantic_similarity.py

…

test_serve_http.py

…

test_serve.py

fix(mcp): preserve parallel edges through graph.json round-trip and MCP output

2026-10-16 18:25:28 +01:00

test_settings_merge.py

…

test_skill_auto_refresh.py

fix(cli): leave installed skills alone on version and help (#4545)

2026-10-20 11:28:03 +01:00

test_skill_code_only_incremental_update.py

fix: materialize extraction for code-only incremental updates

2026-10-16 17:13:49 +01:00

test_skill_codex_semantic_merge.py

…

test_skill_no_backtick_substitution.py

test(skill): no command runs from backticks in -c "..." blocks

2026-10-16 17:13:54 +01:00

test_skill_part_a_explicit_root.py

…

test_skill_persisted_scan_options.py

…

test_skill_semantic_all_cached.py

…

test_skill_version_warning.py

…

test_skillgen_input_path_injection.py

…

test_skillgen.py

fix(skill): dispatch Pi's semantic subagents as pi-subagents' delegate

2026-10-16 18:21:34 +01:00

test_solidity_extractor.py

…

test_solidity_inherited_calls.py

…

test_source_file_encoding.py

…

test_source_key_memoization.py

…

test_sourceless_call_targets.py

…

test_src_layout_import_resolution.py

…

test_stale_prune.py

…

test_stat_index_husk.py

…

test_stat_index_multi_root.py

…

test_stat_index_portability.py

…

test_suggest_questions_ambiguous.py

…

test_svelte_extraction.py

…

test_swift_builtin_noise.py

…

test_swift_computed_properties.py

…

test_swift_cross_file_calls.py

…

test_swift_generic_type_params.py

…

test_swift_import_resolution.py

…

test_swift_macro_declarations.py

fix(swift): extract macro declarations and resolve freestanding macro calls

2026-10-20 10:35:25 +01:00

test_swift_protocol_dispatch.py

…

test_swift_protocol_requirements.py

…

test_swift_self_type_ref.py

…

test_symbol_resolution.py

…

test_terraform_modules.py

…

test_terraform.py

…

test_trailing_newline_not_a_syntax_error.py

…

test_transcribe.py

…

test_tree_html.py

…

test_truncation_full_answer.py

…

test_ts_abstract_methods.py

…

test_ts_decorators.py

…

test_ts_export_type_star.py

…

test_ts_generators.py

…

test_ts_import_require.py

…

test_ts_import_type_arguments.py

…

test_ts_inheritance.py

…

test_ts_namespace.py

…

test_ts_new_expression_calls.py

…

test_ts_parse_warning.py

…

test_ts_receiver_member_calls.py

…

test_type_only_import_cycles.py

…

test_typescript_enum_members.py

…

test_typescript_module_extensions.py

…

test_uninstall_purge_safety.py

…

test_uninstall_scope.py

…

test_uninstall_symlink.py

…

test_unmapped_at_alias_resolution.py

…

test_unverified_semantic_shrink.py

…

test_validate.py

…

test_vbnet_extractor.py

…

test_vue_extraction.py

…

test_walk_python_tree_iterative.py

…

test_watch_identity_cache.py

…

test_watch_manifest_location.py

…

test_watch.py

…

test_wheel_packaging.py

…

test_wiki_link_filename_parity.py

…

test_wiki_truncation_indicator.py

…

test_wiki.py

…

test_word_count_cache.py

…

test_zero_node_no_cache.py

…