hopstreax c443ee7b3a fix(detect): respect cache root for converted sidecars (#2787) ...

Converted Office/Google-Workspace sidecars were written to `root/GRAPHIFY_OUT/converted`,
always anchored to the scanned source tree, so `graphify extract --out <dir>` against a
read-only or pinned checkout polluted the source tree. Route sidecar writes through the
cache root while keeping the content hash anchored to the scan root, so sidecar filenames
stay stable across checkouts.

2026-08-19 14:05:58 +01:00

..

fixtures

feat(commonlisp): add Common Lisp .lisp/.cl/.lsp/.asd extractor (optional tree-sitter-commonlisp extra)

2026-08-17 16:05:33 +01:00

__init__.py

…

bench_extract.py

…

bench_query_scoring.py

…

conftest.py

test: probe-and-skip symlink tests where symlink creation is unavailable (#2642)

2026-08-12 20:56:28 +01:00

test_affected_cli.py

test(affected): cover outside-root clean-miss and non-out-dir graph layout (#2706)

2026-08-15 17:16:53 +01:00

test_affected_member_seed.py

…

test_agents_platform.py

…

test_analyze.py

…

test_anthropic_custom_endpoint.py

…

test_antigravity_install.py

fix(install): stop hardcoding the global skill path in the Antigravity workflow (#2319)

2026-07-30 17:13:48 +01:00

test_apm_fallback_version.py

fix(manifest): capture package version in the apm.yml fallback parser (#2465)

2026-08-13 14:17:41 +01:00

test_architecture_doc.py

docs: refresh ARCHITECTURE.md module table + add a doc-parity test (keeps the #2558 'an' fix)

2026-08-12 20:57:39 +01:00

test_astro_extraction.py

…

test_astro_import_ids.py

fix(extract): canonicalize regex-rescue import target ids (#2195)

2026-07-26 11:52:20 +01:00

test_atomic_writes.py

test: probe-and-skip symlink tests where symlink creation is unavailable (#2642)

2026-08-12 20:56:28 +01:00

test_backend_extras.py

…

test_benchmark_raw_graph.py

fix: load raw edges-keyed graphs + stop pruning alive files as deleted (#2212, #2210)

2026-07-27 10:46:47 +01:00

test_benchmark.py

fix(benchmark): guard against a node with a None label (#2674)

2026-08-12 14:20:21 +01:00

test_build_merge_hyperedges_and_prune.py

fix(build): form-insensitive prune + scan-root marker (#2012)

2026-07-20 13:29:54 +01:00

test_build_merge_shrink_guard.py

fix(build_merge): revive the #479 shrink guard and fix absolute-path prune (#2497, #2446)

2026-08-06 17:29:18 +01:00

test_build.py

test(build): assert legacy-confidence normalization is idempotent; open 0.9.47

2026-08-18 15:59:23 +01:00

test_builtin_global_type_refs.py

…

test_cache.py

fix(cache): surface corrupt semantic cache entries instead of silently missing (#2683)

2026-08-13 13:30:24 +01:00

test_callflow_html.py

fix(callflow,query): direction-aware callflow; drop relational-verb seed pollution; bump to 0.9.35

2026-08-06 17:29:18 +01:00

test_cargo_introspect.py

…

test_case_sensitive_resolution.py

…

test_charmap_encoding.py

…

test_chunking.py

fix(cache): don't promote truncated LLM chunks to the semantic cache as complete

2026-07-16 23:48:07 +01:00

test_cjs_module_extension.py

…

test_claude_cli_backend.py

fix(update,llm): retry failed extractions; surface claude-cli envelope errors; bump to 0.9.37 (#2543, #2554)

2026-08-08 23:37:49 +01:00

test_claude_md.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_cli_broken_pipe.py

…

test_cli_export.py

test(query): assert the CLI query call site wires graph_path (#2789)

2026-08-18 22:38:47 +01:00

test_cluster.py

…

test_codebuddy.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_community_hub_labels.py

…

test_community_labels_skill.py

fix(hyperedge,skill): merge/load hyperedge integrity + community labels; bump to 0.9.34

2026-08-05 22:08:29 +01:00

test_confidence.py

fix(extract): give AST INFERRED edges a rubric confidence_score (#2813)

2026-08-18 16:02:02 +01:00

test_corrupt_graph_json.py

…

test_cpp_objc_cross_file_calls.py

…

test_cpp_preprocess.py

test: Windows path portability in tests; llm emits POSIX source_file to the model (#2620)

2026-08-12 20:56:28 +01:00

test_cross_extension_reexport_self_cycle.py

fix(resolution): repoint cross-extension re-exports without leaking an absolute path (#1814)

2026-07-18 12:04:23 +01:00

test_cross_language_call_resolution.py

…

test_csharp_member_calls.py

test(csharp): cover builtin-not-fabricated and struct primary-ctor (#2829)

2026-08-18 18:07:12 +01:00

test_csharp_partial_classes.py

fix(extract,watch): C# assembly-aware partial merge, incremental edge preservation, extract crash recovery; bump to 0.9.33

2026-08-05 01:41:12 +01:00

test_csharp_type_resolution.py

…

test_dart.py

…

test_dedup_remaps_hyperedges.py

test(dedup): pin chained-collapse and kept-single-member for hyperedge rewire (#2805)

2026-08-17 15:35:53 +01:00

test_dedup.py

fix(dedup): don't over-merge distinct same-file labels differing by a content word (#2576)

2026-08-10 18:06:50 +01:00

test_detect.py

fix(detect): respect cache root for converted sidecars (#2787)

2026-08-19 14:05:58 +01:00

test_devin.py

…

test_dotnet.py

fix(csharp): extract members inside #if preprocessor blocks (#2634)

2026-08-11 20:09:59 +01:00

test_evidence_binding.py

fix(llm): move the unverifiable-node flag to a real, consumed field (follow-up to #1949)

2026-07-17 00:09:02 +01:00

test_explain_cli.py

fix: explain no longer resolves an ambiguous name to an arbitrary file

2026-07-30 17:13:48 +01:00

test_export_path_length.py

harden(export): widen dedup reserve to 5 and add multibyte budget test (#2655)

2026-08-14 14:26:12 +01:00

test_export.py

test(export): lock non-ASCII round-trip byte-identity for field-order fix (#2582)

2026-08-18 22:27:27 +01:00

test_extract_cache_location.py

…

test_extract_cli.py

fix(update,llm): retry failed extractions; surface claude-cli envelope errors; bump to 0.9.37 (#2543, #2554)

2026-08-08 23:37:49 +01:00

test_extract_code_only_cli.py

fix(detect): stop the sensitive-file filter from dropping topic docs and real source (#2106)

2026-07-22 18:40:11 +01:00

test_extract.py

fix(js): dedup factory-object contains edge; cover arrow + bare-receiver (#2745)

2026-08-18 22:32:41 +01:00

test_extraction_spec_ids.py

…

test_extractors_registry.py

…

test_falkordb_integration.py

…

test_file_label_disambiguation.py

fix(cli): disambiguate file labels on the --no-cluster extract path too (#2032)

2026-07-20 16:35:14 +01:00

test_file_node_id_spec.py

…

test_file_slice.py

…

test_gemini_hook.py

…

test_global_graph.py

fix: preserve edge direction in merge-graphs

2026-07-29 17:02:00 +01:00

test_go_builtin_call_targets.py

fix(go): scope the predeclared-function filter to Go bare identifiers

2026-07-30 17:13:48 +01:00

test_go_qualified_resolution.py

test(go): cover method-level and all-exported case-only collisions (#2779)

2026-08-16 18:35:46 +01:00

test_god_nodes_cli.py

fix(cli): wire god-nodes subcommand + accept --output alias on extract (#2004)

2026-07-20 15:35:40 +01:00

test_google_workspace.py

…

test_home_sandbox.py

fix(install): scope uninstall to project_dir instead of always deleting the global skill (#2215)

2026-07-27 10:46:47 +01:00

test_hook_guard.py

…

test_hook_strict.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_hooks.py

test(hooks): replace static string-match with a runtime same-head test (#2421)

2026-08-17 17:53:43 +01:00

test_hyperedge_member_shapes.py

fix(hyperedge,skill): merge/load hyperedge integrity + community labels; bump to 0.9.34

2026-08-05 22:08:29 +01:00

test_hyperedge_roundtrip.py

fix(hyperedge,skill): merge/load hyperedge integrity + community labels; bump to 0.9.34

2026-08-05 22:08:29 +01:00

test_hypergraph.py

test(export): cover many/empty id-less hyperedges; open 0.9.45 (#2775)

2026-08-16 18:28:53 +01:00

test_id_normalization_contract.py

fix(ids): make normalize_id caseless-stable via a casefold+NFKC fixpoint loop

2026-08-17 19:00:46 +01:00

test_ignore_file_encoding.py

fix(detect): decode a UTF-16-BOM ignore file instead of latin-1 garbage (#2798)

2026-08-17 15:40:19 +01:00

test_image_vision.py

test(claude): lock first-text-block (not concatenation) for the ThinkingBlock helper (#2697)

2026-08-18 22:20:19 +01:00

test_import_extension_resolution.py

…

test_import_self_loops.py

fix: drop collapsed import self-loops

2026-07-20 11:29:22 +01:00

test_incomplete_build_guard.py

fix(extract): incremental --no-cluster merges instead of overwriting the graph (#2169)

2026-07-25 22:53:43 +01:00

test_incremental_mtime_collision.py

fix(detect): re-queue a same-tick same-length rewrite in incremental runs (#2466)

2026-08-13 14:21:22 +01:00

test_incremental.py

fix(extract): stamp target_file on Python imports and markdown refs so incremental targets canonicalize (#2211, #2213)

2026-07-27 10:46:47 +01:00

test_indirect_call_arrow_single_param_shadow.py

fix(extract): shadow a single unparenthesised arrow parameter from indirect_call args

2026-08-11 15:18:33 +01:00

test_indirect_call_catch_binding_shadow.py

fix(extract): shadow JS/TS catch bindings from indirect_call args (#2568 family)

2026-08-11 16:54:35 +01:00

test_indirect_call_external_import_shadow.py

test(js): cover external-import-shadow vs same-named local callable (#2757)

2026-08-15 16:43:11 +01:00

test_indirect_call_for_of_binding_shadow.py

fix(js): shadow for...of / for...in loop bindings from indirect_call args (#2568 family)

2026-08-13 13:30:24 +01:00

test_indirect_call_function_expression_shadow.py

fix(js): also shadow generator function-expression bindings; lock .tsx coupling (#2752)

2026-08-15 20:11:13 +01:00

test_indirect_call_nested_closure_shadow.py

fix(extract): shadow untracked JS/TS closure params from indirect_call args (#2241)

2026-07-28 09:37:39 +01:00

test_indirect_dispatch_assign_return.py

…

test_indirect_dispatch_getattr.py

…

test_indirect_dispatch.py

fix(extract,watch): C# assembly-aware partial merge, incremental edge preservation, extract crash recovery; bump to 0.9.33

2026-08-05 01:41:12 +01:00

test_inferred_confidence_rubric.py

fix(extract): give AST INFERRED edges a rubric confidence_score (#2813)

2026-08-18 16:02:02 +01:00

test_ingest.py

…

test_install_references.py

fix(install): make the staged skill bundle writable so a read-only package installs (#2453)

2026-08-13 14:17:42 +01:00

test_install_roundtrip.py

…

test_install_strings.py

…

test_install_upgrade.py

…

test_install_version_stamp.py

test(install): assert stale untouched platform still warns end-to-end (#2694)

2026-08-16 18:34:11 +01:00

test_install.py

test(install): cover CLAUDE_CONFIG_DIR always-on registration (#2694)

2026-08-15 21:54:36 +01:00

test_java_member_calls.py

…

test_java_type_resolution.py

fix(update,java): prune newly-ignored files; stop external-annotation/local-class conflation (#2495, #2504)

2026-08-06 17:29:18 +01:00

test_js_callback_calls.py

fix: JS/Kotlin/Swift/SQL extractor correctness batch; bump to 0.9.38 (#2568, #2565, #2561, #2577, #2575)

2026-08-09 23:19:08 +01:00

test_js_dynamic_import_affected.py

fix(extract): affected traverses in-function dynamic imports; Python member-call gating; ObjC resolver arm; bump to 0.9.39 (#2584, #2586, #2589, #2591)

2026-08-10 18:07:20 +01:00

test_js_dynamic_imports.py

fix(js): extract nested function declarations (#2653)

2026-08-14 14:49:56 +01:00

test_js_exported_scalar_bindings.py

fix(extract): emit nodes for exported scalar bindings

2026-07-30 17:13:48 +01:00

test_js_import_resolution.py

fix(js): stabilize unresolved local import target ids (#2457)

2026-08-12 14:20:21 +01:00

test_jsconfig_baseurl.py

test(resolution): assert canonical import-target ids in jsconfig tests (follow-up to #2169)

2026-07-25 23:16:52 +01:00

test_kotlin_grammar.py

fix(extract): gate the #2551 partial-parse warning on plausible symbol loss (#2610, #2599)

2026-08-11 15:18:12 +01:00

test_kotlin_object_literal.py

fix(extract): C# inline-declared + partial-class receivers, Kotlin anonymous-object members (#2346, #2332, #2347)

2026-08-01 12:21:04 +01:00

test_label_retry.py

…

test_labeling.py

fix(cli): surface four silent success-exit failures (#2534)

2026-08-07 22:49:25 +01:00

test_language_resolvers.py

…

test_languages.py

test(java): make the annotation no-dup test effective + add string/enum guard (#2426)

2026-08-17 18:42:21 +01:00

test_llm_backends.py

fix(llm): add rationale guidance to the API extraction prompt (#2482)

2026-08-11 16:54:35 +01:00

test_llm_parser.py

…

test_long_path_hashing.py

…

test_manifest_ingest.py

fix(ingest): recognize Cargo.toml as a package manifest (#2434)

2026-08-11 16:54:35 +01:00

test_mcp_ingest.py

…

test_merge_chunks_validation.py

fix(merge-chunks): fail when no chunk validates

2026-07-17 10:54:07 +01:00

test_merge_graphs_cli.py

fix(hyperedge,skill): merge/load hyperedge integrity + community labels; bump to 0.9.34

2026-08-05 22:08:29 +01:00

test_minhash.py

…

test_multigraph_compat.py

…

test_multigraph_diagnostics.py

…

test_multilang.py

fix: JS/Kotlin/Swift/SQL extractor correctness batch; bump to 0.9.38 (#2568, #2565, #2561, #2577, #2575)

2026-08-09 23:19:08 +01:00

test_node_id_canonical.py

fix(extract): parse .tsx with the TSX grammar so symbol-resolution stops leaking absolute-slug ids (#2262)

2026-07-29 17:25:08 +01:00

test_non_regular_files.py

fix(detect): skip non-regular files so a FIFO can't hang extraction (#2463)

2026-08-13 14:20:36 +01:00

test_non_string_node_ids.py

fix(build): coerce non-string node ids so a numeric id cannot abort the build

2026-08-01 11:36:30 +01:00

test_objc_category_interfaces.py

fix(objc): protocol not a receiver type, category fold, property/ivar receivers (#2589, #2590, #2591)

2026-08-10 18:06:50 +01:00

test_objc_member_calls.py

fix(objc): protocol not a receiver type, category fold, property/ivar receivers (#2589, #2590, #2591)

2026-08-10 18:06:50 +01:00

test_objc_property_ivar_receivers.py

fix(objc): protocol not a receiver type, category fold, property/ivar receivers (#2589, #2590, #2591)

2026-08-10 18:06:50 +01:00

test_obsidian_dangling_member.py

…

test_obsidian_filename_cap.py

…

test_obsidian_unicode_tags.py

test(obsidian): cover non-ASCII community tags and colour-group parity (#2862)

2026-08-19 14:05:58 +01:00

test_ocaml.py

fix(ocaml): don't bind a qualified external call to a same-named local def

2026-08-14 21:09:32 +01:00

test_office_incremental.py

…

test_office_limits.py

…

test_ollama_retry_cap.py

…

test_ollama.py

…

test_openai_custom_endpoint.py

…

test_partial_cache.py

fix(update,llm): retry failed extractions; surface claude-cli envelope errors; bump to 0.9.37 (#2543, #2554)

2026-08-08 23:37:49 +01:00

test_pascal_call_scoping.py

…

test_pascal_resolution.py

…

test_pascal.py

…

test_path_cli.py

fix(path): respect edge direction by default in path and shortest_path (#2487)

2026-08-05 22:08:29 +01:00

test_paths.py

fix(paths): implement cross-platform absolute path detection for stored paths

2026-08-11 14:40:01 +01:00

test_pg_introspect.py

fix(pg_introspect): emit FK DDL before function stubs so unparseable routines can't drop references edges (#1854)

2026-07-16 16:36:49 +01:00

test_phantom_cross_package_call.py

…

test_phantom_external_import.py

…

test_php_type_resolution.py

fix(extract): resolve prefixed PHP use-imports to their target (#2661)

2026-08-12 14:20:21 +01:00

test_pipeline.py

…

test_provider_registry.py

…

test_prs.py

fix(prs): decode gh/git/claude output as UTF-8, not the Windows cp1252 codec

2026-07-18 12:03:47 +01:00

test_prune_sweeps_orphans.py

test(build): pin shrink-guard safety and shared-stub survival for orphan sweep (#2807)

2026-08-17 15:33:34 +01:00

test_python_decorators.py

fix(extract): suppress builtin/stdlib Python decorators from reference edges (follow-up to #2154)

2026-07-25 22:53:43 +01:00

test_python_import_resolution.py

fix(python): resolve relative subpackage imports to their __init__ (#2688)

2026-08-13 13:30:24 +01:00

test_query_cli.py

fix: preserve calls edge direction in graphify query output

2026-07-21 21:45:53 +01:00

test_query_induced_edges.py

fix(query): render every edge between visited nodes, not just traversal edges

2026-08-01 11:36:30 +01:00

test_query_names_its_graph.py

fix(query): name the graph the answer came from (#2789)

2026-08-18 22:36:42 +01:00

test_querylog.py

…

test_rationale.py

fix(extract): normalize whitespace before truncating rationale labels (#2206)

2026-07-28 09:37:39 +01:00

test_read_hook.py

…

test_reflect.py

…

test_relation_collapse_precedence.py

test(build): assert metadata survives demotion + unknown-relation is specific; open 0.9.46 (#2803)

2026-08-17 15:25:39 +01:00

test_replace_or_append_section.py

…

test_report.py

fix(report): use a portable basename in the GRAPH_REPORT header (#2682)

2026-08-13 13:30:24 +01:00

test_ruby_resolution.py

fix(ruby): resolve compact/nested mixin targets, prevent phantom concern hub (#2302)

2026-08-01 15:36:17 +01:00

test_scala_self_type.py

fix(scala): dispatch self-type annotations to requires edges (#2052)

2026-07-28 09:37:39 +01:00

test_scip_ingest.py

…

test_search_hook.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_security.py

…

test_semantic_cache_out_root.py

fix(cache): anchor semantic cache writes to cache_root so --out round-trips (#1990, #1991)

2026-07-18 19:09:53 +01:00

test_semantic_cleanup.py

fix(merge-chunks): validate untrusted subagent chunk JSON before merging

2026-07-16 23:36:49 +01:00

test_semantic_fragment_sanitize.py

…

test_semantic_id_remap_root.py

…

test_semantic_similarity.py

…

test_serve_http.py

fix(serve): bound multi-project graph contexts (#2268)

2026-07-29 17:02:00 +01:00

test_serve.py

test(serve): add over-match guard for underscore token splitting (#2473)

2026-08-17 18:30:50 +01:00

test_settings_merge.py

fix(install): never clobber an unparseable settings file; back up before write (#2167)

2026-07-25 22:53:43 +01:00

test_skill_version_warning.py

…

test_skillgen.py

fix(skill): make the Windows skill variant runnable on PowerShell; bump to 0.9.36 (#2528)

2026-08-07 22:49:51 +01:00

test_src_layout_import_resolution.py

fix(extract): harden #2072 src-layout resolution (adversarial-review fixes)

2026-07-21 14:22:50 +01:00

test_stale_prune.py

fix: load raw edges-keyed graphs + stop pruning alive files as deleted (#2212, #2210)

2026-07-27 10:46:47 +01:00

test_stat_index_portability.py

fix(cache): implement racily-clean guard for file hashing; enhance stat signature checks

2026-08-11 14:40:01 +01:00

test_swift_builtin_noise.py

fix(extract,analyze): filter Swift/Foundation/SwiftUI builtins from resolution and god-node ranking (#2147)

2026-07-25 15:44:50 +01:00

test_swift_computed_properties.py

fix(swift): extract computed & observed properties (#2181)

2026-07-27 10:22:48 +01:00

test_swift_cross_file_calls.py

fix: JS/Kotlin/Swift/SQL extractor correctness batch; bump to 0.9.38 (#2568, #2565, #2561, #2577, #2575)

2026-08-09 23:19:08 +01:00

test_swift_import_resolution.py

…

test_symbol_resolution.py

fix(extract): give AST INFERRED edges a rubric confidence_score (#2813)

2026-08-18 16:02:02 +01:00

test_terraform.py

…

test_transcribe.py

…

test_tree_html.py

fix(cli): surface four silent success-exit failures (#2534)

2026-08-07 22:49:25 +01:00

test_ts_decorators.py

…

test_ts_generators.py

…

test_ts_import_require.py

…

test_ts_inheritance.py

…

test_ts_namespace.py

…

test_ts_parse_warning.py

fix(extract): gate the #2551 partial-parse warning on plausible symbol loss (#2610, #2599)

2026-08-11 15:18:12 +01:00

test_ts_receiver_member_calls.py

fix(extract): TS member-call gating + Kotlin grammar match (#2553, #2552, #2526, #2550, #2551)

2026-08-08 23:37:32 +01:00

test_typescript_module_extensions.py

…

test_uninstall_scope.py

fix(install): scope uninstall to project_dir instead of always deleting the global skill (#2215)

2026-07-27 10:46:47 +01:00

test_validate.py

fix(build): fold legacy node/edge aliases and re-key absolute-derived semantic ids (#2194, #2197)

2026-07-26 11:52:20 +01:00

test_vue_extraction.py

…

test_watch_manifest_location.py

test(watch): cover manifest location, anchor and commit provenance (#2316)

2026-08-01 11:36:30 +01:00

test_watch.py

harden(watch): document cwd anchor fallback, align bucket tuple, add tests (#2603)

2026-08-16 19:22:06 +01:00

test_wheel_packaging.py

…

test_wiki_link_filename_parity.py

test(wiki): make the bracketed-label parity case non-vacuous (#2597)

2026-08-14 14:21:34 +01:00

test_wiki.py

fix(wiki): make a link target the article filename verbatim, not its percent-encoded twin (#2597)

2026-08-14 14:20:04 +01:00

test_word_count_cache.py

fix(cache): implement racily-clean guard for file hashing; enhance stat signature checks

2026-08-11 14:40:01 +01:00

test_zero_node_no_cache.py

…