Safi 12a9b5e812 fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178) ...

Three-part fix:

dedup.py: Pass 1 exact-merge now skips nodes with an empty source_file.
Previously all no-source_file nodes with the same label landed in one
bucket and were merged, destroying distinct symbols (third-party deps,
standalone functions) that happened to share a short name.

update.md (skillgen + all 13 host variants): the --update merge now
passes both deleted AND changed files to prune_sources, mirroring what
watch._rebuild_code already does correctly. Old nodes for re-extracted
files are pruned before fresh AST is inserted — no fuzzy reconciliation
needed, no cross-file collapse possible.

export.py: anti-shrink guard message now names fuzzy dedup as a
possible cause (not only "missing chunk files"), and advises a full
rebuild as the safe recovery path.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

2026-06-07 14:26:14 +01:00

..

graphify__always_on__agents-md.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__always_on__antigravity-rules.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__always_on__claude-md.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__always_on__gemini-md.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__always_on__kiro-steering.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__always_on__vscode-instructions.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skill-aider.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-amp.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-claw.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-codex.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-copilot.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-devin.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-droid.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-kilo.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-kiro.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-opencode.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-pi.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-trae.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-vscode.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill-windows.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skill.md

fix: four bugs — affected direction, hook root, glob fish/zsh, manifest drift (#1174 #1173 #1172 #1163)

2026-06-07 12:40:44 +01:00

graphify__skills__amp__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__amp__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__claude__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claude__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__claw__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__claw__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__codex__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__codex__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__copilot__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__copilot__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__droid__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__droid__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__kilo__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kilo__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kilo__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__kilo__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__kilo__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kilo__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kilo__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kilo__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__kiro__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__kiro__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__opencode__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__opencode__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__opencode__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__opencode__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__opencode__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__opencode__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__opencode__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__opencode__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__pi__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__pi__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__pi__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__pi__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__pi__references__hooks.md

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graphify__skills__pi__references__query.md

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2026-06-02 20:48:13 +01:00

graphify__skills__pi__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__pi__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__trae__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__trae__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__trae__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__trae__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__trae__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__trae__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__trae__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__trae__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__vscode__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__vscode__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__vscode__references__extraction-spec.md

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graphify__skills__vscode__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__vscode__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__vscode__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__vscode__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__vscode__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00

graphify__skills__windows__references__add-watch.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__windows__references__exports.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__windows__references__extraction-spec.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__windows__references__github-and-merge.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__windows__references__hooks.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__windows__references__query.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

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graphify__skills__windows__references__transcribe.md

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

graphify__skills__windows__references__update.md

fix: prevent fuzzy dedup from collapsing distinct same-named symbols on --update (#1178)

2026-06-07 14:26:14 +01:00