safishamsi 1fbc623271 fix(query): report real call-site lines + stop silent query truncation (benchmark) ...

Two correctness defects found in a head-to-head benchmark of 0.9.22.

Caller line numbers: explain/affected/get_neighbors/query printed the caller
node's def line for an incoming call, presented as a precise citation, so
click-through landed in the wrong place. The `calls` edge already carries the
true call-site line (engine.py sets it); every caller/relation listing now reads
the traversed edge's source_file:source_location, falling back to the node's own
line only when the edge lacks one.

Silent query truncation: rendered nodes were degree-ordered (a low-degree
definition node ranked last, cut first), the queried symbol wasn't guaranteed to
appear, and the truncation marker sat only at the end so silence read as absence.
Nodes are now ranked by hop distance from the seeds (deterministic), the seed the
question named is rendered first and never truncated, and a prominent TRUNCATED
notice at the top states shown/total counts and how to widen the budget. Also
rewires the seed-first ordering the renderer already supported — a branch merge
had silently dropped the `seeds=` argument, leaving it dead code.

2026-07-21 18:39:05 +01:00

..

fixtures

fix(sql): recover CREATE FUNCTION/PROCEDURE from tree-sitter ERROR nodes (#1910)

2026-07-15 10:58:57 +01:00

__init__.py

feat: core pipeline

2026-04-04 18:52:44 +01:00

bench_extract.py

feat: implement parallel AST extraction using ProcessPoolExecutor with benchmarking support

2026-05-02 12:54:08 +05:30

bench_query_scoring.py

test(serve): rebase #1900 test onto #1918 _score_query API; bench newline

2026-07-15 15:09:17 +01:00

conftest.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_affected_cli.py

fix(query): report real call-site lines + stop silent query truncation (benchmark)

2026-07-21 18:39:05 +01:00

test_affected_member_seed.py

feat(ruby/affected): mixes_in edges for include/extend/prepend + method-bound callers in affected (#1668, #1669)

2026-07-05 11:41:18 +01:00

test_agents_platform.py

feat(install): add cross-framework agents platform (+ skills alias)

2026-06-23 17:26:49 +01:00

test_analyze.py

fix(analyze): exclude rationale nodes from suggested-question gap count (#1768)

2026-07-11 11:52:12 +01:00

test_anthropic_custom_endpoint.py

feat: custom endpoints via OPENAI_BASE_URL/OPENAI_MODEL and ANTHROPIC_BASE_URL/ANTHROPIC_MODEL (#1273)

2026-06-16 01:41:15 +01:00

test_antigravity_install.py

write antigravity rules and workflows on project-scoped install

2026-06-02 23:48:54 +01:00

test_astro_extraction.py

feat(extract): add .astro support (#850)

2026-05-13 10:07:50 -07:00

test_atomic_writes.py

fix(io): route the remaining graph/manifest writers through the atomic helper (follow-up to #1952)

2026-07-16 23:48:07 +01:00

test_backend_extras.py

add anthropic extra and fix backend-missing hints for uv tool installs

2026-06-03 00:08:03 +01:00

test_benchmark.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_build_merge_hyperedges_and_prune.py

fix(build): form-insensitive prune + scan-root marker (#2012)

2026-07-20 13:29:54 +01:00

test_build.py

fix(build): ghost-merge keys on full source_file, not bare basename (#2068)

2026-07-21 13:03:34 +01:00

test_builtin_global_type_refs.py

test(extract): cover builtin static-call shape (Date.now()) for #1726

2026-07-08 12:09:40 +01:00

test_cache.py

fix(cache): key semantic cache on the extraction prompt (#1939)

2026-07-16 16:38:12 +01:00

test_callflow_html.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_cargo_introspect.py

fix(cargo): honor package = "..." rename when resolving internal deps (#1858)

2026-07-14 13:19:16 +01:00

test_case_sensitive_resolution.py

fix(extract): case-sensitive cross-file resolution in case-sensitive languages (#1581)

2026-07-01 15:09:42 +01:00

test_charmap_encoding.py

fix(llm): force UTF-8 encoding on _call_claude_cli subprocess + loud failure on chunk errors (#906)

2026-05-17 11:32:38 +01:00

test_chunking.py

fix(cache): don't promote truncated LLM chunks to the semantic cache as complete

2026-07-16 23:48:07 +01:00

test_cjs_module_extension.py

fix: treat .cjs (explicit CommonJS) as a code extension

2026-07-15 13:13:30 +01:00

test_claude_cli_backend.py

fix(claude-cli): deliver extraction instructions in the user turn

2026-07-02 22:29:30 +01:00

test_claude_md.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_cli_broken_pipe.py

fix(export): coerce non-scalar attrs in graphml; harden pipe-close flush

2026-07-12 23:57:16 +01:00

test_cli_export.py

test(cli): graph.json node ids are portable across checkout paths (#1789)

2026-07-11 16:31:10 +01:00

test_cluster.py

reduce graph update churn and stabilize community IDs

2026-05-12 02:23:51 +03:00

test_codebuddy.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_community_hub_labels.py

fix(cluster): detect stale community labels on cluster-only re-cluster

2026-07-01 11:52:50 +01:00

test_confidence.py

v2: confidence scores on INFERRED edges, avg shown in report

2026-04-06 16:06:31 +01:00

test_corrupt_graph_json.py

test(build): add regression tests for corrupt graph.json (#1537)

2026-07-01 10:49:43 +01:00

test_cpp_objc_cross_file_calls.py

feat(extract): cross-file member-call resolution for C++ and ObjC (#1547, #1556)

2026-06-30 18:30:05 +01:00

test_cpp_preprocess.py

harden ollama metadata egress and cpp path handling (F3, F5)

2026-06-02 22:23:15 +01:00

test_cross_extension_reexport_self_cycle.py

fix(resolution): repoint cross-extension re-exports without leaking an absolute path (#1814)

2026-07-18 12:04:23 +01:00

test_cross_language_call_resolution.py

fix(extract): never bind a cross-file call to a definition in another language family

2026-07-08 01:16:58 +01:00

test_csharp_member_calls.py

test(csharp): chained call off new X(...) resolves (#1770)

2026-07-10 21:57:16 +01:00

test_csharp_type_resolution.py

feat(csharp): namespace-aware cross-file type resolution (#1562)

2026-06-30 19:32:10 +01:00

test_dart.py

feat(extract): SystemVerilog class-level extraction; Dart with-clause mixin fix

2026-06-11 19:52:56 +03:00

test_dedup.py

fix(dedup): deterministic collision survivor + bare-file definer (#1851 followup)

2026-07-14 13:51:42 +01:00

test_detect.py

fix(detect): stop silent data loss from env-dir pruning and absolute-path sidecars (#2058, #2059)

2026-07-20 15:28:59 +01:00

test_devin.py

feat: add Devin CLI support (graphify devin install/uninstall) (#1020)

2026-05-26 09:17:18 +01:00

test_dotnet.py

fix(extract): close residual absolute-path/username leaks (#1899)

2026-07-14 23:42:06 +01:00

test_evidence_binding.py

fix(llm): move the unverifiable-node flag to a real, consumed field (follow-up to #1949)

2026-07-17 00:09:02 +01:00

test_explain_cli.py

fix(query): report real call-site lines + stop silent query truncation (benchmark)

2026-07-21 18:39:05 +01:00

test_export.py

fix(extract): fail closed on malformed existing graph + honor walk_errors (follow-up to #1951)

2026-07-16 23:42:47 +01:00

test_extract_cache_location.py

fix(cache): stat-index must follow the cache location, not the key anchor

2026-07-13 10:29:26 +01:00

test_extract_cli.py

fix(extract): initialize detection for pathless Postgres

2026-07-20 11:31:36 +01:00

test_extract_code_only_cli.py

fix(cli): wire god-nodes subcommand + accept --output alias on extract (#2004)

2026-07-20 15:35:40 +01:00

test_extract.py

fix(extract): anchor source_file on the scan root, not the --out dir (#1941)

2026-07-17 11:35:11 +01:00

test_extraction_spec_ids.py

fix(ids): node IDs include the full repo-relative path (#1504, #1509)

2026-06-28 16:57:00 +01:00

test_extractors_registry.py

test(extractors): guard facade + registry identity for the per-language split (#1721)

2026-07-09 13:22:36 +01:00

test_falkordb_integration.py

feat: add FalkorDB export backend (#1175)

2026-06-07 15:03:49 +03:00

test_file_label_disambiguation.py

fix(cli): disambiguate file labels on the --no-cluster extract path too (#2032)

2026-07-20 16:35:14 +01:00

test_file_node_id_spec.py

fix(ids): node IDs include the full repo-relative path (#1504, #1509)

2026-06-28 16:57:00 +01:00

test_file_slice.py

Slice oversized text documents so the whole file is extracted (#1369)

2026-06-18 01:55:56 +01:00

test_gemini_hook.py

Fix: port the Gemini CLI BeforeTool graph-nudge hook to be shell-agnostic too (#522)

2026-07-06 16:43:21 +01:00

test_global_graph.py

fix(global-graph): rewire edges to deduplicated external nodes (#1250)

2026-06-11 09:36:38 +02:00

test_god_nodes_cli.py

fix(cli): wire god-nodes subcommand + accept --output alias on extract (#2004)

2026-07-20 15:35:40 +01:00

test_google_workspace.py

Harden Google Workspace gws exports (#772)

2026-05-07 20:07:57 +01:00

test_hook_guard.py

test: rigorous edge cases for the hook-guard subcommand (#522)

2026-07-06 16:49:31 +01:00

test_hook_strict.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_hooks.py

Fix spurious hooksPath warning and register graph.json merge driver

2026-07-15 00:41:36 +01:00

test_hypergraph.py

fix(hyperedge): accept members/node_ids alias keys for the member list (#1561)

2026-06-30 16:58:23 +01:00

test_id_normalization_contract.py

Unify node-ID normalization into a single source of truth (#1378)

2026-06-18 22:55:44 +01:00

test_image_vision.py

Contain symlinked extraction inputs

2026-07-02 22:29:32 +01:00

test_import_extension_resolution.py

fix(extract): apply resolver fixups to JS/TS dynamic_import handler

2026-05-05 00:07:50 +02:00

test_import_self_loops.py

fix: drop collapsed import self-loops

2026-07-20 11:29:22 +01:00

test_incomplete_build_guard.py

fix(extract): fail closed on malformed existing graph + honor walk_errors (follow-up to #1951)

2026-07-16 23:42:47 +01:00

test_incremental.py

fix(update): prune edges owned by a re-extracted file (#1521)

2026-06-28 19:29:51 +01:00

test_indirect_dispatch_assign_return.py

feat(extract): capture assignment/return indirect_call edges (#1566 slice 2)

2026-06-30 23:26:13 +01:00

test_indirect_dispatch_getattr.py

feat(extract): capture getattr(obj, "name") indirect_call edges (#1566 slice 3)

2026-07-01 10:30:47 +01:00

test_indirect_dispatch.py

fix(extract): cross-file indirect_call survives id relativization (0.9.4 regression)

2026-07-01 11:43:05 +01:00

test_ingest.py

feat: self-improving work-memory — save-result outcomes + graphify reflect (#1441)

2026-06-24 11:43:13 +01:00

test_install_references.py

fix: four production bugs — Windows crashes, ghost-merge collision, version probe

2026-06-13 15:13:23 +01:00

test_install_roundtrip.py

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

test_install_strings.py

Fix: port the Gemini CLI BeforeTool graph-nudge hook to be shell-agnostic too (#522)

2026-07-06 16:43:21 +01:00

test_install_upgrade.py

Fix: make Claude Code / Codebuddy PreToolUse graph-nudge hooks work on Windows (#522)

2026-07-06 16:38:42 +01:00

test_install.py

fix(install): uninstall must not delete a user's ### graphify H3 section (#2062)

2026-07-21 12:40:49 +01:00

test_java_member_calls.py

fix(extract): resolve Java member calls by receiver type (#1696)

2026-07-10 02:11:36 +01:00

test_java_type_resolution.py

fix(extract): resolve Java cross-module type references by import (#1744)

2026-07-09 10:44:50 +01:00

test_js_import_resolution.py

fix(extract): don't guess an ambiguous barrel re-export (follow-up to #2034)

2026-07-20 11:41:44 +01:00

test_label_retry.py

Adaptive split-and-retry for community labeling on parse failure (#1280, #1278)

2026-06-18 22:50:52 +01:00

test_labeling.py

fix(label): --no-label placeholders no longer permanently suppress real labels (#2073)

2026-07-21 12:59:10 +01:00

test_language_resolvers.py

feat(ruby): type-aware member-call resolution via a resolver framework (#1499)

2026-06-29 09:40:22 +01:00

test_languages.py

fix(extract): nested types get a contains edge from the enclosing type (#2040)

2026-07-20 15:40:32 +01:00

test_llm_backends.py

fix(llm): fall back to OLLAMA_HOST when OLLAMA_BASE_URL is unset

2026-07-20 11:29:22 +01:00

test_llm_parser.py

fix(claude-cli): deliver extraction instructions in the user turn

2026-07-02 22:29:30 +01:00

test_long_path_hashing.py

fix(detect): incremental correctness for Office sources + long paths, cache word counts (#1649, #1655, #1656)

2026-07-04 22:12:47 +01:00

test_manifest_ingest.py

Parse package manifests into canonical package nodes + depends_on edges (#1377)

2026-06-19 10:25:09 +01:00

test_mcp_ingest.py

feat: MCP config extractor (.mcp.json, claude_desktop_config.json, mcp.json)

2026-05-26 20:16:41 +01:00

test_merge_chunks_validation.py

fix(merge-chunks): fail when no chunk validates

2026-07-17 10:54:07 +01:00

test_merge_graphs_cli.py

fix(merge-graphs): give each input a distinct repo tag so same-stem nodes don't collapse (#1729)

2026-07-08 12:45:08 +01:00

test_minhash.py

perf/fix: replace datasketch with pure-numpy MinHash; memoize detect ignore checks

2026-06-10 15:50:38 +01:00

test_multigraph_compat.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_multigraph_diagnostics.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_multilang.py

fix(sql): recover CREATE FUNCTION/PROCEDURE from tree-sitter ERROR nodes (#1910)

2026-07-15 10:58:57 +01:00

test_obsidian_dangling_member.py

fix(export): guard to_canvas against dangling community members (#1236 follow-up)

2026-07-03 18:34:41 +01:00

test_obsidian_filename_cap.py

cap obsidian/canvas filenames to avoid ENAMETOOLONG on long labels (fixes #1094)

2026-05-31 16:41:18 +01:00

test_office_incremental.py

fix(detect): incremental correctness for Office sources + long paths, cache word counts (#1649, #1655, #1656)

2026-07-04 22:12:47 +01:00

test_office_limits.py

tighten F2 and F3 from review: bounded decompression, ollama DNS + clean error

2026-06-02 22:50:33 +01:00

test_ollama_retry_cap.py

Fix: cap Ollama client-side retries so a hung request cannot multiply the stall (#1686)

2026-07-06 12:44:47 +01:00

test_ollama.py

tighten F2 and F3 from review: bounded decompression, ollama DNS + clean error

2026-06-02 22:50:33 +01:00

test_openai_custom_endpoint.py

feat: custom endpoints via OPENAI_BASE_URL/OPENAI_MODEL and ANTHROPIC_BASE_URL/ANTHROPIC_MODEL (#1273)

2026-06-16 01:41:15 +01:00

test_partial_cache.py

fix(cache): mark files partial on empty-parse truncation (follow-up to #1950)

2026-07-17 00:02:15 +01:00

test_pascal_call_scoping.py

fix(extract): scope Pascal/Delphi call resolution + resolve inherited calls across files (#1739)

2026-07-09 00:32:21 +01:00

test_pascal_resolution.py

fix(extract): scope Pascal/Delphi call resolution + resolve inherited calls across files (#1739)

2026-07-09 00:32:21 +01:00

test_pascal.py

fix: surface silently-skipped dirs in enumeration + dedup Pascal edges

2026-07-09 01:06:02 +01:00

test_path_cli.py

fix(path): deterministic route + honest edge relation, not fabricated calls (#2074)

2026-07-21 12:54:58 +01:00

test_paths.py

fix(resolve): test mocks no longer erase the real cross-file call graph (#1553)

2026-06-30 16:59:16 +01:00

test_pg_introspect.py

fix(pg_introspect): emit FK DDL before function stubs so unparseable routines can't drop references edges (#1854)

2026-07-16 16:36:49 +01:00

test_phantom_cross_package_call.py

fix(extract): gate JS/TS cross-file calls on import evidence to kill phantom cross-package edges (#1659)

2026-07-04 21:22:39 +01:00

test_phantom_external_import.py

fix: harden semantic extraction and kill phantom import edges (#1631, #1638, #1632)

2026-07-04 03:12:23 +01:00

test_php_type_resolution.py

fix: preserve semantic layer, stamp hyperedges, PHP namespaces, ignore diagnostic (#1925 #1920 #1923 #1922)

2026-07-15 19:51:53 +01:00

test_pipeline.py

v0.4.15: VS Code Copilot Chat, OpenCode/Gemini Windows fixes, .mjs/.ejs, macOS watch, god_nodes degree rename

2026-04-15 23:08:43 +01:00

test_provider_registry.py

validate custom-provider base_url and gate project-local providers (F1)

2026-06-02 22:16:58 +01:00

test_prs.py

fix(prs): decode gh/git/claude output as UTF-8, not the Windows cp1252 codec

2026-07-18 12:03:47 +01:00

test_python_import_resolution.py

feat: add cross-language semantic contexts for Python, JS/TS, C#, and Java (#996)

2026-05-24 20:38:10 +01:00

test_query_cli.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_querylog.py

fix(querylog): make the query log opt-in, off by default (#1797)

2026-07-12 10:36:00 +01:00

test_rationale.py

feat: extract rationale comments + ADR/RFC doc references from JS/TS

2026-07-06 00:45:51 +01:00

test_read_hook.py

Fix: make Claude Code / Codebuddy PreToolUse graph-nudge hooks work on Windows (#522)

2026-07-06 16:38:42 +01:00

test_reflect.py

fix(reflect): layout-ordered source resolution for overlay staleness (#1558)

2026-06-30 12:57:33 +01:00

test_replace_or_append_section.py

Fix: exact-match section heading in _replace_or_append_section to prevent CLAUDE.md data loss (#1688)

2026-07-06 12:36:12 +01:00

test_report.py

fix(report): don't emit dangling [[_COMMUNITY_*]] wikilinks by default (#1712)

2026-07-07 10:57:52 +01:00

test_ruby_resolution.py

fix(extract): route .rake files to the Ruby extractor + resolution (#1784)

2026-07-11 11:31:47 +01:00

test_scip_ingest.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_search_hook.py

fix(install): fire the search nudge on Claude Code's Grep tool, not just Bash (#1986)

2026-07-18 19:07:16 +01:00

test_security.py

test: guard to_html/sanitize_label against null source_file/label (#1775)

2026-07-10 20:24:25 +01:00

test_semantic_cache_out_root.py

fix(cache): anchor semantic cache writes to cache_root so --out round-trips (#1990, #1991)

2026-07-18 19:09:53 +01:00

test_semantic_cleanup.py

fix(merge-chunks): validate untrusted subagent chunk JSON before merging

2026-07-16 23:36:49 +01:00

test_semantic_fragment_sanitize.py

fix: harden semantic extraction and kill phantom import edges (#1631, #1638, #1632)

2026-07-04 03:12:23 +01:00

test_semantic_id_remap_root.py

fix(build): make _semantic_id_remap idempotent to stop id accretion (#1917)

2026-07-15 15:14:34 +01:00

test_semantic_similarity.py

v2: semantic similarity edges, scored higher in surprising connections

2026-04-06 16:06:31 +01:00

test_serve_http.py

feat(serve): optional project_path for multi-project MCP serving

2026-07-02 12:11:51 +01:00

test_serve.py

fix(query): report real call-site lines + stop silent query truncation (benchmark)

2026-07-21 18:39:05 +01:00

test_skill_version_warning.py

fix(cli): make skill-version warning direction-aware (#1568)

2026-06-30 23:15:52 +01:00

test_skillgen.py

fix(cache): key semantic cache on the extraction prompt (#1939)

2026-07-16 16:38:12 +01:00

test_src_layout_import_resolution.py

fix(extract): harden #2072 src-layout resolution (adversarial-review fixes)

2026-07-21 14:22:50 +01:00

test_swift_cross_file_calls.py

fix(swift): resolve calls on a singleton cached into a local var (#1604)

2026-07-02 11:46:22 +01:00

test_swift_import_resolution.py

Collapse Swift module imports to one shared node

2026-06-16 03:06:43 +01:00

test_symbol_resolution.py

fix(resolve): test mocks no longer erase the real cross-file call graph (#1553)

2026-06-30 16:59:16 +01:00

test_terraform.py

revert: remove importorskip now that uv.lock includes tree-sitter-hcl

2026-06-05 21:46:25 +01:00

test_transcribe.py

Remove Anthropic API call from transcribe.py - agent generates Whisper prompt itself

2026-04-10 15:55:22 +01:00

test_ts_decorators.py

fix(extract): emit reference edges for TS/JS decorators

2026-07-02 22:38:29 +01:00

test_ts_generators.py

fix(extract): extract TS/JS generator functions as nodes

2026-07-02 22:38:28 +01:00

test_ts_import_require.py

fix: harden semantic extraction and kill phantom import edges (#1631, #1638, #1632)

2026-07-04 03:12:23 +01:00

test_ts_inheritance.py

capture TS interface-extends and same-file class heritage (fixes #1095)

2026-05-31 16:47:52 +01:00

test_ts_namespace.py

fix(extract): emit a node for TS namespace / module containers

2026-07-02 22:38:29 +01:00

test_ts_receiver_member_calls.py

feat(extract): TS/JS member calls on local new-binding + typed-param receivers (#1630)

2026-07-03 16:03:18 +01:00

test_typescript_module_extensions.py

fix(extract): recognize uppercase TypeScript

2026-07-14 23:32:02 +01:00

test_validate.py

Fix: validate_extraction crashes on non-hashable node id / edge endpoint

2026-06-24 08:54:11 +01:00

test_vue_extraction.py

fix(extract): parse .vue SFC <script> with the right grammar (#1468)

2026-06-26 10:20:53 +01:00

test_watch.py

fix(watch): don't evict remote-source nodes after URL slash-collapse (#2051 follow-up)

2026-07-20 13:57:12 +01:00

test_wheel_packaging.py

feat(install): add cross-framework agents platform (+ skills alias)

2026-06-23 17:26:49 +01:00

test_wiki.py

fix(wiki): portable relative markdown links so navigation works outside Obsidian (#1444)

2026-06-27 10:19:15 +01:00

test_word_count_cache.py

fix(cache): key file_hash stat-index memo by salt, not absolute path (#1989)

2026-07-18 12:03:34 +01:00

test_zero_node_no_cache.py

fix(extract): don't cache zero-node results; warn on empty source files (#1666)

2026-07-05 10:33:07 +01:00