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Modify JATS reader to handle BITS too (#9138)

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Add provision for title-group, book, book-part-wrapper, book-meta,
book-part-meta, book-title, book-title-group, index, toc, legend,
title, collection-meta
This commit is contained in:
Julia Diaz
2023-10-26 15:18:33 -07:00
committed by GitHub
parent b671e0dfe5
commit f2a22e71df
12 changed files with 1217 additions and 14 deletions
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test/command/bits-book.md
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```
% pandoc -f jats -t native
<book dtd-version="2.1" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML">
<front-matter>
<front-matter-part>
<book-part-meta>
<title-group>
<title>About this book</title>
</title-group>
</book-part-meta>
<named-book-part-body>
<sec sec-type="miscinfo">
<title>The NCBI Handbook</title>
<p>Bioinformatics consists of a computational approach
to biomedical information management and analysis.</p>
</sec>
</named-book-part-body>
</front-matter-part>
</front-matter>
<book-body>
<book-part id="bid.1" book-part-type="part">
<book-part-meta>
<title-group>
<label>Part 1</label>
<title>The Databases</title>
</title-group>
</book-part-meta>
<body>
<sec id="bid.3">
<title>History</title>
<p>Initially, GenBank was built and maintained at Los Alamos
National Laboratory.</p>
</sec>
</body>
<back>
<title>Back matter of book part</title>
<ref-list>
<title>References</title>
<ref id="bid.41">
<label>1</label>
<element-citation>
<person-group>
<string-name>
<surname>Olson</surname>
<given-names>M</given-names>
</string-name>
<string-name>
<surname>Hood</surname>
<given-names>L</given-names>
</string-name>
<string-name>
<surname>Cantor</surname>
<given-names>C</given-names>
</string-name>
<string-name>
<surname>Botstein</surname>
<given-names>D</given-names>
</string-name>
</person-group>
<article-title>A common language for physical mapping of the human genome</article-title>
<source>Science</source>
<year iso-8601-date="1989">1989</year>
<volume>245</volume>
<issue>4925</issue>
<fpage>1434</fpage>
<lpage>1435</lpage>
<pub-id pub-id-type="pmid">2781285</pub-id>
</element-citation>
</ref>
</ref-list>
</back>
</book-part>
</book-body>
<book-back>
<ack id="bid.394">
<title>Acknowledgments</title>
<p>We gratefully acknowledge the work of Vladimir Soussov,
as well as the entire NCBI Entrez team...</p>
</ack>
</book-back>
</book>
^D
[ Header
2
( "" , [] , [] )
[ Str "The" , Space , Str "NCBI" , Space , Str "Handbook" ]
, Para
[ Str "Bioinformatics"
, Space
, Str "consists"
, Space
, Str "of"
, Space
, Str "a"
, Space
, Str "computational"
, Space
, Str "approach"
, SoftBreak
, Str "to"
, Space
, Str "biomedical"
, Space
, Str "information"
, Space
, Str "management"
, Space
, Str "and"
, Space
, Str "analysis."
]
, Header 2 ( "bid.3" , [] , [] ) [ Str "History" ]
, Para
[ Str "Initially,"
, Space
, Str "GenBank"
, Space
, Str "was"
, Space
, Str "built"
, Space
, Str "and"
, Space
, Str "maintained"
, Space
, Str "at"
, Space
, Str "Los"
, Space
, Str "Alamos"
, SoftBreak
, Str "National"
, Space
, Str "Laboratory."
]
, Header
2
( "" , [] , [] )
[ Str "Back"
, Space
, Str "matter"
, Space
, Str "of"
, Space
, Str "book"
, Space
, Str "part"
]
, Header 1 ( "" , [] , [] ) [ Str "References" ]
, Div ( "refs" , [] , [] ) []
, Header 2 ( "bid.394" , [] , [] ) [ Str "Acknowledgments" ]
, Para
[ Str "We"
, Space
, Str "gratefully"
, Space
, Str "acknowledge"
, Space
, Str "the"
, Space
, Str "work"
, Space
, Str "of"
, Space
, Str "Vladimir"
, Space
, Str "Soussov,"
, SoftBreak
, Str "as"
, Space
, Str "well"
, Space
, Str "as"
, Space
, Str "the"
, Space
, Str "entire"
, Space
, Str "NCBI"
, Space
, Str "Entrez"
, Space
, Str "team..."
]
]
```