Commit Graph
395 Commits
Author SHA1 Message Date
morluto 5147b6e306 fix(environment)!: attribute source errors to caller fields (#7900)
* fix(environment): attribute source file errors to caller fields

* style(environment): format source admission tests
2026-10-29 08:12:09 +08:00
morluto c7722c8eeb fix(cli): honor token controls for builtin documents (#7897) 2026-10-29 08:11:19 +08:00
morluto 3a512303d9 fix(cli)!: refuse lossy text output (#7852)
* fix(cli)!: refuse lossy text output

* fix(cli): retain failure identity on text refusal

* fix(cli): check failed TOON token windows

* test(cli): bound keyed archive case duration
2026-10-29 08:09:49 +08:00
Wenyu Chiou 3142f7b0dd fix(adb): align CLI selector schemas with canonical inputs (#7722)
* fix(adb): align CLI selector schemas with canonical inputs

Reuse canonical selector constraints for ADB CLI admission and cover schema, parser, and inert provider boundaries. Independent source review approved tree bc722f8d1b1f8d014be29533e6845c6f897d5918; full contribution checks remain pending.

* test(adb): expect CLI serial validation refusal

Independent review approved staged diff 35418e6994339af838b490be51278fd41b9f8e3e. Focused serial refusal test, lint, and formatting passed with existing dependencies.

* test(adb): assert CLI selector validation stage

Independent review approved staged diff a1164a8dcf1df1f0d60323d7a53a69ee2bfdffeb. Focused dispatch tests, targeted lint and formatting passed using existing dependencies.

* fix(adb): retain safe selector validation constraints

Independent review: review_ci_delta APPROVE for diff 18748a3b4b112dc96b95f7c1099bd479e1d1587b. Focused tests, typecheck and targeted lint passed; the aggregate check remains limited by a matching baseline Knip finding.
2026-10-29 07:44:43 +08:00
morluto f9acfdcf49 fix(cli): retain committed evidence receipts on output failure (#7906) 2026-10-29 05:11:02 +08:00
morluto 76c7698ac9 fix(cli)!: preserve native value input diagnostics (#7889) 2026-10-29 05:10:28 +08:00
morluto e03ff93913 fix(frida): retain selected discovery endpoint on failure (#7892) 2026-10-29 05:04:53 +08:00
gensokyo-devandEntrpi 37827af591 feat(artifacts): compare inventories from Evidence sources (#7869)
* feat(artifacts): compare artifacts by Evidence reference and from the CLI

compare_artifacts made agents send back the complete inventory Evidence
that REA already retains, and the CLI had no artifact comparison.

Each side of compare_artifacts now takes exactly one of: complete inline
Evidence (unchanged), {kind: "retained-evidence", evidence_id}, or
{kind: "evidence-file", path, evidence_id?}. The two references are the
sources inspect_analysis_view accepts; both tools now compose one
definition in evidenceReference.ts. A summary still resolves to its exact
retained parent, and every source form gives the same comparison Evidence.
An unresolvable retained reference is refused with a typed missing
reference error.

The application layer owns source resolution and the comparison Evidence,
so MCP and the new `rea compare-artifacts` command share one workflow.
readEvidenceFileSource reports bundle-selection refusals at the caller's
own field path.

* refactor(artifacts): resolve compare_artifacts sides like compare_functions

compare_functions, compare_wasm_interfaces and the JavaScript application
comparisons name each side with evidenceInputSchema and resolve it with
resolvePairedEvidenceRequest. compare_artifacts reached the same result
for inline and retained sides through its own dispatch.

evidenceSourceInputSchema now extends evidenceInputSchema with the
Evidence-file reference, and resolvePairedEvidenceSources sends inline and
retained sides to the same resolveEvidenceInput and file sides to the
shared Evidence file reader. compare_artifacts uses both, so the forms it
shares with compare_functions are parsed and resolved by one owner. The
advertised input schema is unchanged.

* docs(cli): point rea compare to compare-artifacts for inventory contents

rea compare (compare_bundles) compares records by Evidence identity and
explicit pairs and never reads artifact contents, so two build
inventories stay unresolved there. Its help and the CLI guide now name
compare-artifacts for that comparison.

* fix(artifacts): resolve summary parents within Evidence source bundles

* perf(evidence): reuse file-owned immutable authentication proofs

* test(evidence): inject failures at both authentication boundaries

---------

Co-authored-by: Entrpi <entrpi@proton.me>
2026-10-29 03:12:03 +08:00
morluto 60ab4da329 fix(cli): correct completion options and setup guidance (#7851)
* fix(cli): align MCP doctor completion with its options

* fix(cli): explain zsh completion initialization

* fix(cli): include launcher timing in doctor completion

* style(cli): format doctor completion schema
2026-10-29 01:28:04 +08:00
gensokyo-dev c77735fa83 fix(setup)!: bind managed registrations to selected installation
Use one command owner for setup, client writers, Gemini policy and CLI defaults.
Migrate recognized runner registrations with backups and remove runner prewarm.
Retain unknown identities and exercise real offline npm, CLI and MCP workflows.

Fixes #7757

BREAKING CHANGE: managed MCP registrations use the selected absolute runtime
and REA entry script, including package-runner cache paths. Keep that installation
available or restore it before setup; unknown registrations require confirmed
manual repair. Setup no longer returns prewarm or emits its progress events.

Assisted-by: Reimu (gensokyo-skills:reimu-incident-triage)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
2026-10-28 11:34:28 +00:00
gensokyo-dev 3b242491a4 fix(cli): attribute keyed archive errors to archive argument (#7731)
* fix(cli): attribute keyed archive errors to archive argument

* test(cli): assert input-error projection reference reuse
2026-10-28 16:48:20 +08:00
gensokyo-dev 6a226bd092 fix(apple): validate keyed archive selectors consistently (#7728) 2026-10-28 16:01:17 +08:00
gensokyo-dev 0e4b806db1 fix(cli): preserve missing-selection Markdown token windows (#7726) 2026-10-28 15:23:00 +08:00
gensokyo-dev a0a1962e06 fix(cli): validate byte queries before opening targets (#7723) 2026-10-28 15:00:01 +08:00
5ae77656e7 feat(workflows): expose guided prompts through CLI and MCP (#6995)
* feat(workflows): expose guided prompts through CLI and MCP

* fix(workflows): address guided workflow review findings

* fix(workflows): preserve scoped contracts and actionable validation

* test(workflows): allow bounded CLI startup on shared hosts

* test(workflows): audit guidance effects and content provenance

* perf(workflows): defer rendering and separate catalog scope

---------

Co-authored-by: Deepak-Kambala <deepakkambala07@gmail.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
2026-10-28 14:12:39 +08:00
gensokyo-dev 3d5c73f35c fix(cli): retain JSONL parser diagnostics under token counting (#7705) 2026-10-28 11:48:31 +08:00
aa6f6436c9 feat(cli): add CSV and TSV analysis views (#7254)
* feat(cli): add CSV and TSV analysis views

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Update tests/boundary/cli/filteredArrayOutput.test.ts

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* Update src/cli.ts

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* fix(cli): address delimited export review feedback

* fix(cli): format delimited output block in cliResultOutput

* fix(cli): retain delimited view uncertainty and align completions

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
2026-10-28 11:27:40 +08:00
PM baec375c34 fix(cli): validate outline-depth before numeric coercion (#7505)
Fixes morluto/rea#7425

Signed-off-by: pqminh27 <minh8a1hb@gmail.com>
2026-10-28 05:16:49 +08:00
PM 423d190026 fix(cli): preserve Markdown table edge spaces (#7506)
Fixes morluto/rea#7432

Signed-off-by: pqminh27 <minh8a1hb@gmail.com>
2026-10-28 05:16:28 +08:00
S1MonandS1Mon bcc6775dc1 fix(cli): reject non-decimal Android overload index tokens (#7493)
Android overload selection declared a plain number, so the CLI argument
parser coerced the raw token with Number before the schema ran. An empty
token therefore arrived as 0, and hexadecimal, exponent, signed, and
float spellings arrived as their numeric value, leaving both commands to
proceed to artifact admission on a selector the caller never wrote as a
decimal integer.

Reuse the existing decimal token parser that the other integer CLI
options already use. Omitted and explicit decimal zero keep their current
meanings, and the published schema for overloadIndex is unchanged.

Validation: npm run compile, the cli-boundary vitest project for
tests/boundary/cli/cliIntegerArguments.test.ts (56 passed), npm run
typecheck, npm run lint, npm run lint:typed, npm run format:check, npm
run metadata:check, npm run verify:architecture-guards, and npm run
knip:production. The new cases fail against the base source and pass with
the change.

Fixes #7430.

Co-authored-by: S1Mon <251732998+fgfsgsgvo@users.noreply.github.com>
2026-10-27 23:25:32 +08:00
gensokyo-dev 570abe95f2 feat(android): link native declarations to static JNI candidates (#7472)
Link original DEX native declarations to per-ABI function exports and relocated static JNI table candidates through shared CLI/MCP workflows. Preserve global attribution ambiguity, exact provenance, partial coverage and retained Evidence; default MCP delivery to bounded summaries with filtered/batch pages.

Use one immutable ELF relocation decoder with streaming IL2CPP materialization, cooperative bounded export/version parsing and bounded JNI state. Reuse validated session inventories without loading target libraries or executing JNI code.

Validation: relevant type/lint/build and parser/domain/public CLI/MCP regressions; genuine four-ABI NDK fixtures and independent library/slot oracles; actual JDK/JADX Conscrypt workflows with retained-source removal. Full measurements and limitations are recorded in docs/verification/android-jni-bindings-2026-10-27.md.

Closes #6403.
2026-10-27 18:53:22 +08:00
gensokyo-devand555aaditya 03f17cf41d feat(android): apply caller-selected R8 mapping evidence (#7456)
Apply caller-selected R8/ProGuard mappings to shared Android inspections, preserving raw identities, exact verification, ambiguity and provenance. Add retained summaries and bounded/cached parsing, with measured real R8/Conscrypt workflows and review fixes.

Fixes #6329.

Co-authored-by: 555aaditya <107977627+555aaditya@users.noreply.github.com>
2026-10-27 15:47:08 +08:00
morluto 4e67bc3999 refactor(analysis): consolidate selection ownership 2026-10-27 13:21:35 +08:00
gensokyo-devandHarsh 7e8f7f6101 feat(android): expose selected manifest component declarations (#7379)
Extend static manifest declarations and retain precise source locations and historical unknowns. Share bounded selected component views across CLI and MCP with complete parent Evidence.

Verified real ApiDemos, an AAPT2-built fixture, legacy Evidence, default-package metadata and relevant CLI/MCP contracts. Recorded whole-task token estimates, timing/resource limits and independent main-failure controls in the PR.

Co-authored-by: Harsh <johiyaharsh@gmail.com>
2026-10-27 12:37:10 +08:00
morluto 3d311d9eca fix(cli): report failed browser cleanup retries 2026-10-27 12:31:48 +08:00
morluto c4242cb85e fix(evidence): own standalone command finalization 2026-10-27 12:24:59 +08:00
morluto e334a13c79 fix(cli): merge mixed array filter selections 2026-10-27 12:14:36 +08:00
morluto 47a8000cce fix(cli): project nested array slices 2026-10-27 12:06:29 +08:00
morluto 9eb8ba2b29 refactor(cli): use builtin argument owner directly 2026-10-27 09:29:20 +08:00
morluto 329325049c refactor(cli): retain typed analysis outcomes through delivery 2026-10-27 09:16:02 +08:00
morluto 5cf7133f82 refactor(javascript)!: consolidate renderer and route ownership
Remove the derived package renderer property from new application graphs. Use renderer_declarations for source fields and package loads edges for the selected candidate; previously retained Evidence remains readable.
2026-10-27 09:05:24 +08:00
morluto 6d7e627783 fix(cli): preserve literal evidence in Markdown output 2026-10-27 09:04:11 +08:00
morluto 6b3a081f36 fix(flutter): retain snapshot cleanup ownership 2026-10-27 08:29:29 +08:00
morluto 567ea4b1e8 refactor(ownership)!: consolidate legacy aliases
Migrate schema, installer, ASN.1, and tooling consumers to their owning definitions. Remove the redundant CI task entry and the deprecated Cutter command-local JSON flag.

BREAKING CHANGE: Replace Cutter --json=true or --json=false with --json-output=true or --json-output=false. Bare --json still controls CLI result formatting.
2026-10-27 06:31:23 +08:00
morluto f68064e46c fix(evidence): exclude sensitive publication identities 2026-10-27 03:12:22 +08:00
morluto 347494f3ab fix(captures): preserve cleanup ownership and sensitive evidence 2026-10-27 03:02:38 +08:00
gensokyo-devandHarsH 6d5532a204 feat(web): page retained bundle endpoint observations and inferences (#7259)
Page retained web-bundle endpoint observations and inferences through shared CLI/MCP projections, preserving source identities, scoped unknowns, coverage and complete Evidence access.

Based on HarsH’s original implementation in #7213 (6b1d5d42). Real Chromium/CLI/SDK verification and whole-task cost limits are recorded in docs/verification/web-bundle-paging-2026-10-26.md.

Explicit user authorization permits leaving human-readiness declarations unchecked and bypassing reproduced main failures (ADB listing fixture, package catalog expectation, untouched APK verifier formatting). No human-review attestation is made.

Co-authored-by: HarsH <harshasalkar7@gmail.com>
2026-10-27 01:37:39 +08:00
Dery Ferdikaandgensokyo-dev aa6c1d49fd fix(mcp)!: require allowed hosts for non-loopback HTTP binds (#7172)
Require operator-declared hostnames before serving MCP HTTP outside loopback, preserving Host/Origin gates. Parse hostname identities once, share typed startup recovery across CLI/MCP, and announce an admitted client URL. Generated AgentEnv bundles declare their client/service names and validate DNS/HTTP name identity before export.

Validated through real packaged HTTP requests, direct SDK connection, compiled export refusals, 184 focused tests, static and documentation checks on the refreshed main integration. Final CI and review evidence is recorded in the PR body.

BREAKING CHANGE: non-loopback deployments require MCP_ALLOWED_HOSTS or rea mcp --http --allowed-hosts; bundle names must be unchanged HTTP hostnames within the 63-octet DNS label bound.

Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
2026-10-26 22:55:10 +08:00
morluto 2b84efe0da fix(contracts): align CLI omission and native capability coverage 2026-10-26 22:22:27 +08:00
b675073b73 feat(mcp): scope advertised tools by family (#7228)
Scope MCP discovery, setup, doctor, status and recovery guidance by selected tool families using one contract inventory and shared catalog identity. Preserve default discovery, canonical validation and complete Evidence.

Fixes #3246. Builds on #3026. Real libcrypto workflow verifies all 5,367 exports and identical complete Evidence. Static/source/build/docs/Windows/package/Greptile checks pass; ten assertions reproduced identically on clean main and feature across Node 24/22, with cancelled coverage explicitly unverified. Merge uses the user-authorized bypass for baseline failures and unchecked human-readiness declarations, without attesting human review.

Co-authored-by: 0xLLVEL <fakhrezan1@gmail.com>
Co-authored-by: Codebuff <noreply@codebuff.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-10-26 19:50:12 +08:00
morluto 36515a5c9b refactor(cli): derive desktop limits from the input contract 2026-10-26 15:33:59 +08:00
morluto 06655af306 refactor(evidence): centralize publication source collection 2026-10-26 14:25:50 +08:00
morluto 1fe1f1f8d6 refactor(managed): retire redundant verification facade 2026-10-26 14:14:26 +08:00
morluto 071a637a9f refactor(cli): share managed comparison finalization 2026-10-26 13:53:43 +08:00
morluto 991a240606 fix(cli): preserve script export evidence through shared finalization 2026-10-26 13:47:15 +08:00
b8ce3c74cd feat(native): make function matching allowance configurable (#7159)
Allow native matching representation budgets to be selected at runtime or launch while retaining the 96 MiB default and main shared-provenance accounting. Preserve actionable configuration recovery through the setting owner and verify complete CLI/MCP matches for 20k/50k synthetic inventories and real stripped LLVM 14/15 inventories.

Fixes #6406.

Based on #7112 by Kaoru0822; original authorship and co-author credit retained.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-26 02:22:32 +08:00
gensokyo-dev f69c52a1cf feat(native): page retained load-image observations (#7134)
Add optional native load-image summary delivery and retained selected-row pages through shared CLI/MCP analysis views. Preserve source verification, provenance, unavailable collections, exact row identity and opt-in byte/check payloads.

Preserve direct caller paths during shared CLI summary publication and cover raw/DOL projection contracts through the actual SDK. Real Ghidra ELF CLI/MCP captures, retained and file-backed pages, focused regressions and static checks passed; the PR records existing main schema failures and the JavaScript resource-recovery CI uncertainty.
2026-10-25 21:50:42 +08:00
Kaoru0822andClaude Opus 5.5 e06be06530 fix(cli): report JSON Lines selection refusals as caller errors (#7124)
* fix(cli): report JSON Lines selection refusals as caller errors

A --format jsonl refusal because the selected value is not a record
collection is the caller's output selection, not unreadable analysis
output. Report it as invalid_request/invalid_input that names the
selection and its observed shape, keep the --format json /
--filter-output remediation, and drop the rea doctor advice.

AnalysisInputError gains an optional producer remediation, mirroring
the other refusal classes. The JSON Lines owner examines its documented
boundaries once for both admission and refusal facts.

docs/cli.md now states that columnar results such as
inspect-sqlite-database --table rows are not record collections.

Fixes #7110

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(cli): carry JSON Lines refusal facts as structured observations

JSON Lines refusals now put the location and shape of each refused value
in details.issues[].observed, and the message is built from those facts.
Tests assert the classification, issue path, observed facts, and the
shared remediation constant instead of fixed sentences.

The filtered analysis-view export check now uses a non-empty request
and compares the emitted rows with the unfiltered export.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-25 05:26:13 -07:00
fc43e285ea feat(browser): retain compact scenario summaries and selected views (#7120)
Retain complete browser scenario Evidence while delivering compact summaries and selected step, event, transaction and text views through shared CLI/MCP workflows. Preserve initial CLI failures across cleanup retries and validate with real Chromium/TodoMVC.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-25 19:03:06 +08:00
RRFZ cc146042d1 fix(cli): preserve literal Markdown table facts (#7073)
* fix(cli): preserve literal Markdown table facts

* test(cli): retain capacity diagnostics through Markdown escaping

* fix(cli): keep intraword underscores readable in Markdown tables

Underscore runs between letters or digits cannot open or close CommonMark emphasis, so escaping them only adds noise to identifiers such as source_index and invalid_request in raw Markdown. Escape underscore runs only at word boundaries and restore the original diagnostic assertions.
2026-10-25 13:55:18 +08:00