* feat(web): export captured scripts for JavaScript application analysis
Add capture adapters, conservative source path projection, verified exclusive publication and a shared CLI/MCP workflow. Retain source identities, missing content and competing URL versions in a complete manifest for existing static analysis.
Refs: #774Closes: #799
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* test(web): include script export in independent effect audit
Register the new contract family in the independent inventory audit and verify the filesystem, session, network and idempotence metadata of the named export contract.
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* fix(web): preserve capture limitation values in export manifests
Align the export boundary with passive capture’s string contract instead of rejecting an admitted empty limitation. Cover the publisher boundary and regenerate canonical schemas and identities.
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* feat(ghidra): edit function annotations atomically
Return annotation readback and refreshed function analysis through CLI and MCP. Own each database transaction, invalidate caches and immutable snapshots, preserve executable bytes, and retain the Windows mutation boundary.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* fix(ghidra): preserve qualified function annotation identity
Preserve namespaces during local name writes and match qualified readback to the refreshed dossier. Add a producer-shaped regression and verify a real namespaced C++ function through the CLI.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* test(ghidra): align verification with annotation authority
Keep strict capability and profile checks while admitting the explicit session metadata operation. Verify packaged transport authority and atomic transaction commitments and preserve a read-only Windows expectation.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* feat(ghidra): admit explicit DOS COM analysis
Carry caller-selected COM interpretation through CLI, MCP and target
identity, seed real-mode entry/context before Ghidra analysis, and verify
complete loaded bytes, source mappings and measured register context.
Keep original binaries unchanged and PSP/runtime coverage explicit.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* fix(verification): validate COM package selection before allocating fixtures
* refactor(domain): split error taxonomy into thematic modules
Move each error family out of domain/errors.ts into its own module
(base, core, provider selection/adapter, browser observation,
artifact, evidence, unknown registry, hopper, configuration) and
relocate AnalysisErrorProjection to analysisErrorProjection.
Migrate all 162 importers to the owning modules and delete
errors.ts. No re-export shims; behavior is unchanged.
* refactor(runtime): name all silent catch causes without changing diagnostics
Bind cause in every bare catch and unhandled rejection across src/.
Real failures preserve the cause for logging; best-effort cleanup
carries an explicit comment. Caller-visible and Evidence strings are
byte-identical to before.
Move each error family out of domain/errors.ts into its own module
(base, core, provider selection/adapter, browser observation,
artifact, evidence, unknown registry, hopper, configuration) and
relocate AnalysisErrorProjection to analysisErrorProjection.
Migrate all 162 importers to the owning modules and delete
errors.ts. No re-export shims; behavior is unchanged.
Move official, enhanced, and session contract arrays with their
builders into officialToolContracts, enhancedToolContracts, and
sessionToolContracts. toolContracts keeps the ordered assembly and
resolver. Migrate all importers including catalog scripts. No
re-export shims; generated catalog output is unchanged.
* refactor(domain): consolidate canonical ordering and digest helpers
Single owner for code-point ordering (domain/canonicalOrdering.ts)
and canonical JSON digests (domain/comparisonSemantics.ts). Delete
all local compareCodePoints/compareText/digestCanonical duplicates
and migrate every importer. No re-export shims.
* fix(ci): allow slower real browser startup
## Changes
Related to #545 and the permission-system removal in #555.
- Upgrade the shipped skill to v24 and remove obsolete filesystem grants, per-call approval flags, Electron file-root configuration, and DMG approval flags. Calls follow the user-requested investigation directly. Keep setup plan confirmation, actual OS requirements, and process/archive lifecycle boundaries.
- Correct the passive browser guide: endpoint/scope come from requests; ordinary local URL queries are retained, while credentials remain redacted.
- Audit canonical tool effects: declare possible DMG process/temp-directory effects, mark fresh extraction non-idempotent, and mark comparisons of supplied captures/PNGs as closed-world. Align artifact-provider capability effects with temporary mount-directory writes.
- Retain non-read-only hints for calls that add Evidence to the session; document that annotations are hints and that clients control their confirmation UI. Do not mislabel session mutations as read-only to suppress prompts.
- Regenerate package, skill, MCP, and product metadata from source.
## Verification
- `npm run test:focused -- <11 affected test files>`: **40 tests passed**, including skill transaction/backup/idempotence, SDK tools/list annotations, actual local capture/PNG comparisons, artifact extraction/containment/cancellation, DMG launcher/cleanup seam, setup confirmation, browser MCP and scenario MCP, CLI catalog parity.
- `npm run check`: typecheck, lint, format, knip, package metadata.
- `npm run docs:check`: generated catalogs, skill metadata, documentation facts, completion ledger, error schema.
No local real Hopper/Ghidra run: their adapters and analysis operations are unchanged. Native macOS DMG behavior is covered locally through the launcher seam; no local macOS/hdiutil claim is made.
Real browser verification passed using existing Headless Chrome143.0.7499.4: actual CLI/stdio MCP,9,331,407-byte PNG, passive capture/source maps, and owned/external scenario cleanup. An initial full Chrome143 run failed the existing screenshot-height assertion (1397 versus1536); the dedicated headless-shell run passed the complete verifier without code changes. The verifier run-lineage field remained unavailable; no lineage-coverage claim is made. Browser download into `.codex` was blocked by CDN403, so the successful run used an existing browser without changing host configuration.
* fix(comparisons)!: preserve unknowns across partial observations
Share absence and digest semantics, keep unobserved managed bodies unknown, and match unique managed type/name/signatures before structural fallback.
BREAKING CHANGE: Managed comparison metadata adds exact-signature matching and its count, and name_matching now reports exact-signature-fallback.
* fix(javascript): preserve projected result binding semantics
Share syntax-aware property reads and assigned-result resolution. Retain destructuring paths and downgrade downstream whole-result relationships instead of resolving nested or wrapped calls as aliases.
* fix(native)!: admit complete parser values and preserve typed failures
Decode Mach headers by named columns, validate complete slice keys and lipo alignment, and preserve codesign runtime flags and tagged parser errors. Rename the Ghidra test dossier fixture and connect fake-backed suites to real verification lanes.
BREAKING CHANGE: Native load-command results no longer contain the unused, always-null file_offset field.
* fix(process): preserve host identity and actionable boundary failures
Thread selected platform and environment through process and Doctor seams, stamp observed producer identity in Evidence, and retain PTY, filesystem, lease and lazy-provider failure causes. Drain cancelled lazy loads and omit exited descendants from verified lineage.
* fix(browser): preserve cleanup and document-transition evidence
Make V8 and Playwright teardown cancellation-aware, expose primary failures alongside incomplete cleanup, share frame-tree and navigation rules, and clear stale WebMCP registrations without pruning unrelated child frames.
* fix(adapters): align managed targets and typed CLI outcomes
Inspect managed PE/CLI targets independently of native provider selection, reuse successful managed selections, and keep evidence bound to the actual inspected target. Classify canonical CLI error envelopes and exhaustive setup/update/uninstall outcomes, audit registered CLI coverage, and assert platform-specific runtime results.
* docs: refresh boundary contracts and shipped roadmap behavior
Return complete canonical Evidence records inline, including normalized_result, and preserve direct comparison and retained bundle identity.
Verified full deterministic gate, real Linux Ghidra CLI/MCP and independently installed artifact, generic package acceptance, private local samples, and targeted updates after syncing main.
Closes#551
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* fix(hopper): report unavailable procedure body coverage
* refactor!: simplify runtime tools and remove replay engines
Keep direct inspection, capture, and comparison tools. Bind handlers to named contracts and let agents compose experiments with commands and local fixture servers.
BREAKING CHANGE: Remove controlled replay, Node characterization, finite replay-machine, managed runtime planning, and redundant string-tracing tools. Retire process replay, shims, reactive scenarios, custom checkpoints, and active browser replay and origin-scope inputs.
* refactor(test): colocate pure-domain tests and reduce test debt
Move focused immutable domain/contracts/adapter tests from
tests/composition/** beside their production owners under src/** as
colocated *.test.ts/*.fixture.ts, and relocate persistence-shaped
composition tests under tests/boundary/filesystem/**. Update import
paths, the Vitest project topology (shared worker context for pure
domain/contracts and recording-port service projects), the test
migration ledger, testing docs, and AGENTS.md to match.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* docs: remove test migration ledger
The cutover is complete and the ledger is no longer referenced anywhere
in source, scripts, or the docs gate. Drop the standalone artifact.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* docs: clean up stale migration artifacts
Remove empty directories left by the test migration and replace the
"final cutover" language in docs/testing.md with standing PR guidance
that no longer references the completed migration.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* fix: repair CI failures from schema, knip, and stale generated artifacts
Three root causes fixed:
1. catalog-schemas.mjs: valuesAt only traversed anyOf from Zod's
toJSONSchema, not oneOf. The webScreenshotDiffSchema change to a
discriminated union produces oneOf, so the product catalog generator
could not derive the web_screenshot_diff schema version. Add oneOf
traversal.
2. conformancePackage.ts: the test rewrite removed the only imports of
ScenarioManifest, ReplayPlan, ShimPlan, and ExpectedEvidence, making
them unused exports that knip flags. Remove the dead type aliases.
3. Regenerate stale artifacts (product catalog, MCP tool catalog, skill
metadata, conformance manifest) that drifted from the source changes.
Generated with [Devin](https://devin.ai)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
---------
Co-authored-by: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
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