Resolve conflicts against main:
- README.md: take main's simplified English README, which no longer has
the tool-family table.
- README_ja.md: take main's reworded table and count
trace_dylib_resolution in the artifact graph row (5 -> 6).
- Skill: the references gain the trace_dylib_resolution paragraph, so
the version moves to 29 (main already uses 28).
- Regenerate the product catalog, conformance manifest, skill digest and
package metadata (135 tools). The MCP tool catalog is now built rather
than committed (#997), so it is removed here.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>