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update README: add check-update command, Java inheritance note
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@@ -329,6 +329,7 @@ graphify add https://... --author "Name" --contributor "Name"
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# incremental update and maintenance
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graphify watch ./src # auto-rebuild on code changes
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graphify check-update ./src # check if semantic re-extraction is pending (cron-safe)
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graphify update ./src # re-extract code files, no LLM needed
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graphify cluster-only ./my-project # rerun clustering on existing graph.json
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```
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@@ -337,7 +338,7 @@ Works with any mix of file types:
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| Type | Extensions | Extraction |
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|------|-----------|------------|
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| Code | `.py .ts .js .jsx .tsx .mjs .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl .vue .svelte` | AST via tree-sitter + call-graph (cross-file for all languages) + docstring/comment rationale |
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| Code | `.py .ts .js .jsx .tsx .mjs .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl .vue .svelte` | AST via tree-sitter + call-graph (cross-file for all languages) + Java extends/implements + docstring/comment rationale |
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| Docs | `.md .mdx .html .txt .rst` | Concepts + relationships + design rationale via Claude |
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| Office | `.docx .xlsx` | Converted to markdown then extracted via Claude (requires `pip install graphifyy[office]`) |
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| Papers | `.pdf` | Citation mining + concept extraction |
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