Enables docs-only corpora to run full LLM extraction in CI without Claude Code.
Handles code-only, docs-only, and mixed corpora; --no-cluster for raw dumps.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
- Add Fortran support (26th language): .f/.F/.f90/.F90/.f95/.F95/.f03/.F03/.f08/.F08
via tree-sitter-fortran; capital-F files preprocessed with cpp -w -P
- Add graphify export {html,obsidian,wiki,svg,graphml,neo4j} CLI subcommands
- Add graphify query/path/explain CLI subcommands
- Reduce skill.md from 63KB to 47KB by replacing Python heredocs with CLI calls
- Extend to_html() with node_limit param for auto-aggregation on large graphs
- Add integration tests for all export/query/path/explain subcommands
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
shutil.which() first; falls back to sys.executable sibling Scripts/graphify.exe
so the hook works even when venv/Scripts is not on Codex's PATH.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Codex Desktop rejects hookSpecificOutput.additionalContext on PreToolUse.
hook-check is now a no-op — graph guidance reaches the agent via AGENTS.md/skill.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
#655 and #656 already fixed in cache.py and security.py.
#657: add rationale to file_type schema in all 12 skill variants; warn against inventing concept.
#658: add explicit chunk-merge step with token summation before save_semantic_cache.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
_import_js only created a file→file imports_from edge, leaving named
imported symbols (classes, error types, constants) as degree-1 orphans
with no connection to their consumers.
Track resolved_path when the import target resolves to a local file
(relative path or tsconfig alias). After emitting the file-level edge,
walk import_clause → named_imports → import_specifier to emit a
file → symbol EXTRACTED edge for each named specifier, using the same
_make_id(target_stem, name) key that _extract_generic uses when defining
the symbol.
On a 1696-file TypeScript monorepo this raised edge count from 8530 to
11267 (+2737 edges) and reduced isolated communities from 878 to 604.
The python3 -c "..." approach still failed on Windows Conda (no python3
shim) and PowerShell (JSON curly brace/quote parsing). Replace the inline
command with 'graphify hook-check' — a new shell-agnostic subcommand that
prints the hookSpecificOutput JSON if graph.json exists and exits 0 silently
if not. Works on PowerShell, cmd.exe, macOS, and Linux with no quoting or
interpreter-name issues.
Users must re-run 'graphify codex install' to regenerate the hook.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Bypasses the node-count safety check in to_json for refactors that
legitimately shrink the graph (renames, package deletions). Also
honored by post-commit and post-checkout hooks via GRAPHIFY_FORCE=1.
Implements the approach from #639 (targeted at v5) adapted for v6.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
`extract_kotlin` previously emitted zero `calls` edges (and zero
`raw_calls` entries) on the current PyPI grammar. The Kotlin branch
of `walk_calls` only matched node type `simple_identifier`, but
PyPI's `tree_sitter_kotlin` produces `identifier` for the equivalent
plain-identifier node. The `simple_identifier` ↔ `identifier` rename
is a generation gap between tree-sitter-kotlin grammar versions —
older forks (and the JVM `io.github.bonede:tree-sitter-kotlin`
binding) still use `simple_identifier`.
Accept both names so the extractor works across grammar generations.
Also widens `_KOTLIN_CONFIG.name_fallback_child_types` for the same
reason (defensive — currently the `name` field path covers
class/function name resolution, but if that field is dropped in a
future grammar update the fallback would face the same rename).
Tested against `tests/fixtures/sample.kt`: edges go from 6
(file-contains + class-method only) to 10 (adds 4 in-file `calls`
edges resolved by the walker:
- .get() → .buildRequest() @ L8
- .post() → .buildRequest() @ L12
- createClient() → Config @ L21
- createClient() → HttpClient @ L22).
A new regression test `test_kotlin_emits_in_file_calls` asserts the
four edges so this exact bug can't recur.
Found via graphify-kmp (Kotlin Multiplatform port of graphify) —
its `PythonParityTest` flagged 4 KMP-only edges that Python missed.
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Replace bash-only [ -f ] file check with a cross-platform Python one-liner
so the hook works on Windows where cmd.exe has no [ builtin.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
extract.py: build name -> all candidates map instead of last-write-wins dict.
Skip cross-file INFERRED calls where the callee name resolves to 2+ nodes
(common names like log/execute/find with no import evidence to pick the right
target) — prevents spurious edges from polluting god_nodes degree ranking.
__main__.py: wrap cluster-only to_html in try/except ValueError so large
graphs (>5000 nodes) don't crash the cluster command.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
watch.py: filter preserved nodes by ID membership in new AST output instead
of file_type — INFERRED/AMBIGUOUS nodes on code files also carry file_type=code
and were being wrongly dropped, triggering the to_json safety check refusal.
hooks.py: detach post-commit and post-checkout rebuilds with nohup + disown
so git commit returns immediately instead of blocking for the full rebuild
duration. Rebuild log written to ~/.cache/graphify-rebuild.log.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Safi