Add changelog entries for the Swift cross-file (#1356), update prune (#1361),
obsidian canvas (#1324), and edge source_file backfill (#1279) fixes that
shipped without changelog notes, and a README troubleshooting entry for the
LLM JSON-truncation warnings and how to reduce them.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
ollama/openai/deepseek/kimi set max_tokens in their backend config, but the
openai-compat dispatch read only max_completion_tokens (which only gemini
defines), so their output silently capped at the 8192 fallback and truncated
deep-mode JSON. Read either key and give the openai config an explicit cap;
GRAPHIFY_MAX_OUTPUT_TOKENS still overrides.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Three pass-2 guards (mirrored in the --dedup-llm pair collection): block merges
when labels' embedded numbers differ as zero-padding-insensitive multisets;
block cross-file merges of file-anchored rationale/document nodes (same-file
still merges); and score cross-file long labels on plain Jaro instead of
Jaro-Winkler so the prefix bonus can't fabricate merges of shared-prefix but
token-divergent entities (jest-native vs react-native), while genuine cross-file
duplicates still clear Jaro and same-file near-duplicates keep Jaro-Winkler.
Co-Authored-By: van4oza <van4oza@users.noreply.github.com>
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Semantic/LLM edges occasionally omit source_file, which build only normalized
when already present, so the field reached graph.json empty and downstream
validation flagged it. Backfill from the source (then target) node in
build_from_json and in the --no-cluster raw-write path, which bypasses it.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
to_canvas built cards solely by iterating communities, so a graph with no
community data (--no-cluster builds, or a missing analysis sidecar) wrote the
empty 32-byte {"nodes":[],"edges":[]} shell while notes rendered fine. Fall back
to one synthetic community covering every node so the canvas reflects the graph.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
The /graphify --update runbook called build_merge with absolute prune_sources
but no root=, so _norm_source_file never relativized them to match the graph's
relative source_file values. Nothing was pruned and changed/deleted files left
ghost nodes that compounded on every incremental update. Fix the shared skillgen
fragment to pass root='INPUT_PATH' and re-render all platform artifacts.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Capture property/field initializer constructor calls, build a per-file Swift
type table from property/parameter declarations, and add a member-call
resolution pass that types the receiver and emits an edge only when the type
name resolves to exactly one definition. Additive and INFERRED-only; the
is_member_call drop and the #543/#1219 god-node guards stay intact.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Harden HTML export against U+2028/U+2029 script-breakout XSS + two crash-on-adversarial-input fixes (non-dict LLM JSON, _extract_parallel IndexError). Validated: full suite 2107 passed, HTML export smoke clean. Thanks @mistic96.
build_merge: prune a re-extracted file's stale nodes/edges before merge instead of accumulating (fixes#1283, #1285). Validated: full suite 2107 passed. Thanks @RelywOo.
Index PowerShell .psd1 manifests + emit Import-Module/dot-source edges (closes#1331). Builds on the shipped .psm1 support. Validated: full suite 2107 passed, 18 new tests. Thanks @geektan123.
The query skill was split across two fragments so no platform got both
capabilities: Claude had the vocab/IDF query-expansion step but no fallback if
the CLI was unavailable; every other platform had the inline NetworkX fallback
but the weaker raw-question matcher. Merge into one unified query reference +
stub (Step 0 expansion -> CLI traversal -> inline NetworkX fallback, plus
path/explain inline) shipped to all hosts. Remove the query_variant enum, its
toml field, and the _CLI_ONLY_QUERY_HEADINGS coverage-audit exemption. Re-render
all skill artifacts and re-bless expected/. skillgen check/audit-coverage/
monolith-roundtrip/schema-singleton all pass. Refs #1325.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Same-named types in different packages left implements/inherits edges stuck on
bare shadow stubs, isolating the real interface (_rewire_unique_stub_nodes only
fixes the globally-unique case). New _resolve_java_type_references pass uses each
referencing file's import statements (+ package decl) to build an FQN->def index,
re-points dangling implements/inherits/imports edges to the exact definition, and
drops the orphaned stub. External/stdlib imports stay unresolved (correct). Runs
after id-disambiguation so target ids are final. Java-scoped; other _extract_generic
languages share the same bare-name fallback and remain a follow-up.
Adds tests/test_java_type_resolution.py (simple, ambiguous-by-import, build-survival).
Refs #1318.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Adopts the approach from #1330 (thanks @duncan-daydream) on top of the v0.8.40
Swift import fix: _import_swift returns (id,label) module pairs, the extractor
materializes a type=module anchor node per import, and _disambiguate_colliding_node_ids
exempts type=module nodes so the same module imported from N files collapses to
one shared node (enables reverse traversal "what imports CoreKit"). The --no-cluster
writer now dedupes nodes by id and edges to match the clustered build_from_json path.
Replaces the interim _import_label/synthesize_import_module_nodes mechanism.
Adds tests/test_swift_import_resolution.py (cross-file collapse, build survival)
and dedupe_nodes coverage. Refs #1327, #1330.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Bump version to 0.8.40; document this release in CHANGELOG (PowerShell .psm1
indexing, Swift import survival, no-cluster edge dedup, custom OpenAI/Anthropic
endpoints, JS/TS assignment-form extraction, community-name + --graph fixes,
four production bug fixes, perf, security CI); add .psm1 to the README
supported-extensions table.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
- #1315: add .psm1 to CODE_EXTENSIONS + _DISPATCH so PowerShell modules are indexed
- #1327: synthesize a module node for Swift import targets (new LanguageConfig
flag synthesize_import_module_nodes) so imports edges survive build.py pruning;
strengthen the Swift dangling-edge test to also assert edge targets
- #1317: dedupe parallel edges by (source,target,relation) in the --no-cluster
and incremental update write paths so edge counts are deterministic and
`update` is idempotent
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Extract JS/TS this.X=, exports.X=, prototype, class arrow fields, and function expressions (closes#1322). Validated locally against v8: full suite 2069 passed.
export.py: to_json now accepts community_labels and writes community_name onto
each node. Previously cluster-only wrote labels only to GRAPH_REPORT.md,
graph.html, and .graphify_labels.json — graph.json stored only the numeric cid,
so query/MCP showed blank or numeric community values (#1305).
__main__.py: pass community_labels=labels to to_json in cluster-only path.
explain command now prefers community_name over raw numeric community field.
serve.py: query and get_node read paths prefer community_name over community,
with fallback so old graphs without the field still work. Adds --graph flag as
an alias for the positional argument in graphify-mcp/_main(), fixing
"unrecognized arguments: --graph" for users following the documented pattern
shared by every other graphify subcommand (#1304).
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
extract.py: clamp ProcessPoolExecutor max_workers to 61 on Windows (issue #1298).
Python's ProcessPoolExecutor hard-caps at 61 on Windows via WaitForMultipleObjects;
>61-core machines crashed on AST extraction. Clamp applied after all input paths
(auto-compute, GRAPHIFY_MAX_WORKERS, --max-workers) to cover all three.
build.py: skip ghost-merge when two AST nodes share (basename, label) key (issue #1257).
When same-named symbols appear in same-named files across directories (e.g. two
render() in two index.ts), last-writer-wins produced an arbitrary canonical node
and mis-pointed all edges. Now tracked in _loc_collisions; ambiguous keys are
skipped in Pass 2, leaving the ghost intact rather than merging into the wrong node.
__main__.py: ignore OSError on unreadable .graphify_version probes (issue #1299).
On restricted-permission installs or network mounts, .exists()/.read_text() raised
PermissionError and crashed every graphify query/explain/path call at startup.
All three FS probes now wrapped in try/except OSError: return.
prs.py: resolve claude.cmd on Windows in prs.py claude-cli backend (issue #1288).
The _call_llm and _call_claude_cli paths were already fixed; prs.py had the same
bare ["claude", ...] call that fails on Windows npm installs with WinError 2.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
stat+MD5 across all files now fans out over a thread pool instead of running sequentially — I/O-bound work releases the GIL so this scales with available disk concurrency.
Eliminates O(depth) generator-frame chain overhead. Each leaf's value previously propagated through 26+ yield-from frames; now a single stack loop handles the full traversal.
Replaced O(n) linear scan `next((n for n in candidates if n["id"] == neighbor_id))` with O(1) dict lookup via pre-built `candidates_by_id`. Also pre-caches `_norm()` results in `norm_cache` to avoid recomputing per inner iteration.
For a 36k-file codebase (~100k high-entropy candidates) this reduces the pass-2 loop from O(n^2*B) (~30–100B iterations) to O(n*B), eliminating the multi-minute CPU hang after AST extraction completes.
Adds complete Persian translation (README.fa-IR.md) with RTL formatting and updates main README language selector to include Persian between Arabic and Italian.
Safi