Ayushraj06-bit f99a21bac4 fix(build): keep a same-id hyperedge from an untouched file on update ...

build_merge carries forward the hyperedges of files that were not
re-extracted, but it skipped any carried hyperedge whose id also appeared
in the new chunks, whichever file the new one came from. Hyperedge ids
are chosen per extraction, so two documents can emit the same id: a full
build keeps both, yet re-extracting only one of them silently dropped the
other file's hyperedge.

Match a re-emission on (id, source_file) instead of id alone. The new
side's source_file is normalized the same way the carried side already
is, and an empty source_file counts as missing. A re-emission from the
same file, or a source-less hyperedge re-emitted without one, still
replaces the carried copy. merge_raw_extraction already replaces
hyperedges per source with no id-only check, so the two paths now agree.

Refs #3981

(cherry picked from commit 0c72e04c8a)

2026-10-02 17:10:08 +01:00

..

fixtures

feat: add Erlang language extractor

2026-09-21 19:19:26 +01:00

__init__.py

…

bench_extract.py

…

bench_query_scoring.py

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conftest.py

test: isolate backend-detection tests from the developer's environment

2026-09-10 23:04:40 +01:00

test_affected_cli.py

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test_affected_member_seed.py

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test_agents_platform.py

…

test_analyze.py

fix(analyze): make the cross-repo/directory surprise bonus match its reason

2026-09-30 20:41:10 +01:00

test_anthropic_custom_endpoint.py

…

test_antigravity_install.py

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test_apm_fallback_version.py

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test_architecture_doc.py

…

test_astro_extraction.py

fix(extract): parse only Astro frontmatter and scripts in the AST pass

2026-09-30 20:41:10 +01:00

test_astro_import_ids.py

…

test_atomic_canvas_export.py

…

test_atomic_version_stamp.py

…

test_atomic_writes.py

Guard os_replace_with_fallback against src equal to dst

2026-09-12 17:36:09 +01:00

test_backend_env_isolation.py

test: isolate backend-detection tests from the developer's environment

2026-09-10 23:04:40 +01:00

test_backend_extras.py

release: 0.9.61 — fix Python 3.12/3.13 breakage from 0.9.60

2026-09-12 22:23:00 +01:00

test_benchmark_raw_graph.py

…

test_benchmark.py

…

test_blade_extractor.py

fix(blade): link a view to the layout it @extends

2026-09-29 13:49:39 +01:00

test_build_merge_dedup_scope.py

Scope deduplication during incremental merges

2026-09-11 22:46:15 +01:00

test_build_merge_hyperedges_and_prune.py

fix(build): keep a same-id hyperedge from an untouched file on update

2026-10-02 17:10:08 +01:00

test_build_merge_shrink_guard.py

…

test_build.py

fix: complete the Solidity/method-ghost/Erlang review items (#3716, #3719, #3714 follow-ups)

2026-09-21 19:44:17 +01:00

test_builtin_global_type_refs.py

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test_cache.py

Use the replace fallback for AST cache writes

2026-09-12 17:36:09 +01:00

test_callflow_html.py

…

test_cargo_introspect.py

fix(cargo): resolve inherited workspace dependency identity

2026-09-22 15:00:07 +01:00

test_cargo_missing_manifest.py

Add regression tests for cargo extraction with a missing manifest

2026-09-22 14:58:22 +01:00

test_carried_hyperedge_remap.py

test: route carried-hyperedge dedup through a re-extracted chunk (#3503)

2026-09-11 22:51:35 +01:00

test_case_sensitive_resolution.py

…

test_charmap_encoding.py

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test_chunking.py

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test_cjs_module_extension.py

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test_claude_cli_backend.py

fix(claude-cli): tolerate a diagnostic preamble before the JSON envelope

2026-09-05 21:55:34 +01:00

test_claude_md.py

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test_cli_broken_pipe.py

…

test_cli_export.py

Compare partition structure, not just the node id set, for staleness

2026-09-17 11:01:38 +01:00

test_cli_help.py

…

test_cluster_exclude_hubs.py

fix(cluster): keep hub-only neighbours with their hub under --exclude-hubs

2026-09-30 20:41:10 +01:00

test_cluster.py

test(cluster): add the self-loop cohesion_score regressions #3558 described

2026-09-14 18:55:31 +01:00

test_cobol_extractor.py

fix(cobol): link both endpoints of a PERFORM ... THRU range

2026-09-25 15:44:08 +01:00

test_codebuddy.py

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test_community_hub_labels.py

…

test_community_labels_skill.py

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test_confidence.py

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test_corrupt_graph_json.py

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test_cpp_method_declarations.py

fix(cpp): treat a member-function declaration as a method, not a field

2026-10-02 17:10:07 +01:00

test_cpp_nested_and_cli.py

fix(cpp): extract enum / enum class specifiers and their enumerators

2026-09-30 20:16:06 +01:00

test_cpp_objc_cross_file_calls.py

fix(cpp): treat a member-function declaration as a method, not a field

2026-10-02 17:10:07 +01:00

test_cpp_preprocess.py

security(fortran): strip #include directives before cpp (GHSA-pcc4-rvhr-2pr8)

2026-09-27 18:56:31 +01:00

test_cross_extension_reexport_self_cycle.py

…

test_cross_language_call_resolution.py

…

test_cross_repo_external_call_guards.py

fix(merge): respect C# type visibility across repos

2026-09-13 17:47:56 +01:00

test_cross_repo_member_calls.py

…

test_cross_repo_shared_types.py

…

test_csharp_call_site_generic_args.py

fix(csharp): resolve null-conditional member calls (#3797)

2026-10-02 16:50:45 +01:00

test_csharp_enum_members.py

…

test_csharp_field_generic_args.py

…

test_csharp_generic_callsites.py

fix(csharp): resolve unqualified generic call sites, Get<int>(...) (#3406)

2026-09-09 11:30:27 +01:00

test_csharp_interface_dispatch.py

…

test_csharp_member_calls.py

fix(csharp): resolve null-conditional member calls (#3797)

2026-10-02 16:50:45 +01:00

test_csharp_member_nodes.py

…

test_csharp_object_creation.py

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test_csharp_partial_classes.py

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test_csharp_tuple_type_refs.py

test(csharp): verify user-defined tuple element types stay referenced (#3796)

2026-09-27 18:39:52 +01:00

test_csharp_type_resolution.py

fix: prevent C# member nodes from being resolved as types

2026-09-25 16:01:47 +01:00

test_dart.py

Add source_location to Dart extraction

2026-09-07 20:21:35 +01:00

test_dedup_remaps_hyperedges.py

…

test_dedup_survivor_richness.py

Add a regression test for the stray source_location gate

2026-09-25 16:01:47 +01:00

test_dedup.py

fix(dedup): preserve pre-existing self-loops during entity deduplication

2026-09-26 13:53:08 +01:00

test_definition_file_portability.py

…

test_detect.py

feat(extract): include Verilog header files

2026-10-02 17:10:08 +01:00

test_devin.py

…

test_docx_to_markdown.py

fix(detect): keep tables in place and read all text in docx sidecars

2026-09-28 10:15:38 +01:00

test_dotnet.py

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test_duplicate_annotation_edges.py

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test_elixir_import_resolution.py

fix(elixir): guard nested-module capture and same-file contains clobber (#3603 follow-up)

2026-09-16 15:37:30 +01:00

test_erlang_extractor.py

fix(erlang): record local fun references (fun Name/Arity)

2026-10-02 16:50:45 +01:00

test_evidence_binding.py

…

test_explain_cli.py

Stop path::Symbol from shadowing a literal :: label

2026-09-11 23:58:31 +01:00

test_export_control_characters.py

…

test_export_idempotent_writes.py

fix(export): stop rewriting unchanged wiki/Obsidian pages on every run (#3060)

2026-09-23 16:54:04 +01:00

test_export_path_length.py

…

test_export.py

fix: correct node info field names

2026-09-29 13:49:39 +01:00

test_external_stub_endpoints.py

fix(build): mint typed external stubs for undeclared import endpoints (#2873)

2026-09-16 16:20:01 +01:00

test_extract_cache_location.py

…

test_extract_cli.py

…

test_extract_code_only_cli.py

…

test_extract_php_closures.py

test(php): cover file-scope, no-duplicate, and method-scope closures (#3409/#3461 follow-up)

2026-09-23 19:45:40 +01:00

test_extract.py

fix(extract): ignore contained symbols when resolving imported modules (#3887)

2026-09-29 13:49:39 +01:00

test_extraction_spec_ids.py

…

test_extractors_registry.py

…

test_falkordb_integration.py

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test_file_label_disambiguation.py

…

test_file_node_id_spec.py

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test_file_slice.py

…

test_file_truncation_warning.py

fix(llm): warn once when file exceeds _FILE_CHAR_CAP in _read_files (#3773)

2026-09-30 20:10:34 +01:00

test_forwarding_review_findings.py

fix: preserve export cycles and legacy declaration facts

2026-09-05 21:55:33 +01:00

test_gemini_hook.py

…

test_global_add_tag_inference.py

Never infer an empty repo tag for global add

2026-09-10 14:03:22 +01:00

test_global_graph.py

…

test_go_builtin_call_targets.py

…

test_go_import_repoint.py

fix(go): repoint intra-module imports_from edges from go_pkg_ sinks to the package's files

2026-09-22 14:58:12 +01:00

test_go_interface_methods.py

Preserve case-only interface signature owners

2026-09-22 14:58:12 +01:00

test_go_qualified_resolution.py

…

test_god_nodes_cli.py

…

test_god_nodes_exclude_hubs.py

…

test_google_workspace.py

…

test_graphdb_push_indexes.py

fix(export): index (label, id) before the graph DB push upsert loop

2026-09-30 20:41:10 +01:00

test_hollow_chunks_arm_shrink_guard.py

…

test_home_sandbox.py

…

test_hook_chain_survives_skip.py

fix(hooks): a graphify skip must not terminate the whole git hook (#2986)

2026-09-06 16:17:37 +01:00

test_hook_guard_token_match.py

…

test_hook_guard.py

fix(cli): resolve hook-guard output paths instead of substring matching (#3959)

2026-10-02 17:10:07 +01:00

test_hook_out_of_project_paths.py

…

test_hook_strict.py

…

test_hooks.py

fix(hooks): report hooks written by an older release as out of date (#3771)

2026-09-30 20:41:10 +01:00

test_hyperedge_member_shapes.py

…

test_hyperedge_roundtrip.py

…

test_hypergraph.py

…

test_id_normalization_contract.py

…

test_ignore_file_encoding.py

…

test_image_vision.py

…

test_import_extension_resolution.py

…

test_import_self_loops.py

…

test_imported_export_forwarding.py

…

test_incomplete_build_guard.py

…

test_incremental_mtime_collision.py

…

test_incremental.py

fix: preserve cross-file edges during incremental updates

2026-09-25 16:15:15 +01:00

test_indirect_call_arrow_single_param_shadow.py

…

test_indirect_call_block_scoped_shadow.py

Add regression tests for block scoped let/const shadowing

2026-09-20 13:59:26 +01:00

test_indirect_call_catch_binding_shadow.py

…

test_indirect_call_external_import_shadow.py

…

test_indirect_call_for_of_binding_shadow.py

…

test_indirect_call_function_expression_shadow.py

…

test_indirect_call_nested_closure_shadow.py

…

test_indirect_dispatch_assign_return.py

…

test_indirect_dispatch_getattr.py

…

test_indirect_dispatch.py

…

test_inferred_confidence_rubric.py

…

test_ingest_url_type.py

fix(ingest): rewrite only the host when normalizing a tweet URL for oEmbed

2026-09-28 09:13:29 +01:00

test_ingest.py

…

test_inherited_field_receivers.py

…

test_injection_sentinel_coverage.py

…

test_install_references.py

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test_install_roundtrip.py

…

test_install_strings.py

…

test_install_upgrade.py

…

test_install_version_stamp.py

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test_install_version_warning.py

…

test_install.py

fix(install): name the symlink target when writing CLAUDE.md (#3805)

2026-09-30 20:41:10 +01:00

test_issue_3405_python_resolution.py

Fix Python nested function resolution

2026-09-09 17:20:54 +01:00

test_issue_3472_source_file_collision.py

Fix same-file source path collision during merge

2026-09-10 22:44:39 +01:00

test_java_enum_members.py

fix(java): attach enum body members to the enum, not the file

2026-09-20 13:59:25 +01:00

test_java_member_calls.py

fix(java): resolve calls to inherited methods and super

2026-09-30 20:10:34 +01:00

test_java_type_resolution.py

…

test_js_callback_calls.py

…

test_js_destructured_export.py

Add a regression test for unexported require destructures

2026-09-14 18:49:19 +01:00

test_js_dynamic_import_affected.py

…

test_js_dynamic_imports.py

…

test_js_exported_fn_call_resolution.py

fix(js): resolve calls inside exported functions, incl. aliased imports (#3346)

2026-09-12 21:31:34 +01:00

test_js_exported_scalar_bindings.py

…

test_js_import_resolution.py

fix(resolution): prefer source entry over built dist in workspace packages (#3834)

2026-10-02 17:10:08 +01:00

test_js_module_level_anonymous_calls.py

Add regression tests for module level anonymous calls

2026-09-13 17:47:55 +01:00

test_js_this_member_expressions.py

fix(js): keep this.X = function members in every enclosing-function form (#3408)

2026-09-09 11:30:28 +01:00

test_jsconfig_baseurl.py

…

test_jsx_component_usage_calls.py

fix(extract): skip JSX member tags

2026-09-27 18:39:52 +01:00

test_kotlin_grammar.py

fix(kotlin): extract class literal references from annotation arguments (#3835)

2026-10-02 16:50:45 +01:00

test_kotlin_object_literal.py

…

test_label_retry.py

fix(label): keep labels already named when a nested retry fails to parse

2026-09-30 20:41:10 +01:00

test_labeling.py

fix(labeling): retry and report partial community labels

2026-09-22 17:30:28 +01:00

test_language_resolvers.py

…

test_languages.py

feat(extract): include Verilog header files

2026-10-02 17:10:08 +01:00

test_llm_backends.py

fix: label via an installed claude CLI, and stop pinning a path that expires

2026-09-10 22:44:40 +01:00

test_llm_parser_reasoning.py

…

test_llm_parser.py

…

test_long_path_hashing.py

…

test_loose_sibling_import_resolution.py

fix: preserve loose sibling import resolution

2026-09-23 17:01:39 +01:00

test_lua_import.py

test: cover bare require() imports edges for Lua (#3320)

2026-09-13 17:47:57 +01:00

test_lua_method_calls.py

fix(lua): resolve colon-method calls (obj:method())

2026-10-02 16:50:45 +01:00

test_manifest_ingest.py

fix(manifest): treat virtual-workspace-root Cargo.toml as skipped by design (#3910)

2026-09-30 20:41:10 +01:00

test_manifest_tomli_required.py

…

test_markdown_code_spans.py

fix(watch): keep code-span mention edges through a rebuild over an existing graph

2026-09-16 14:50:54 +01:00

test_mcp_ingest.py

…

test_merge_chunks_validation.py

…

test_merge_graphs_cli.py

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test_minhash.py

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test_multigraph_compat.py

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test_multigraph_diagnostics.py

fix(diagnostics): separate external reference edges

2026-09-17 11:01:37 +01:00

test_multilang.py

fix(rust): keep a forward reference unresolved when its type id collides with another item (#3782)

2026-10-02 17:10:07 +01:00

test_no_dedup_flag.py

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test_node_id_canonical.py

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test_non_regular_files.py

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test_non_string_node_ids.py

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test_objc_category_interfaces.py

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test_objc_field_table_remap.py

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test_objc_member_calls.py

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test_objc_property_ivar_receivers.py

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test_obsidian_dangling_member.py

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test_obsidian_filename_cap.py

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test_obsidian_unicode_tags.py

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test_obsidian_vault_migration.py

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test_ocaml.py

fix(ocaml): extract classes and their methods and instance variables

2026-09-26 13:45:58 +01:00

test_office_incremental.py

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test_office_limits.py

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test_ollama_retry_cap.py

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test_ollama.py

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test_openai_custom_endpoint.py

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test_out_dir_evidence.py

fix(detect): probe every out subdirectory under an entry budget, not the first 20

2026-09-09 17:20:57 +01:00

test_oversized_document_slicing.py

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test_owned_type_sources.py

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test_package_json_subpath_imports.py

fix(js): resolve Node subpath imports via package.json imports

2026-09-07 19:02:18 +01:00

test_partial_cache.py

…

test_partial_extraction_warning.py

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test_pascal_call_scoping.py

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test_pascal_resolution.py

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test_pascal.py

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test_path_cli.py

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test_paths.py

…

test_pdf_extra_warning.py

fix(detect): warn when pypdf extra is missing in extract_pdf_text (#3702)

2026-09-28 10:18:13 +01:00

test_pdf_slicing.py

…

test_pdf_token_estimate.py

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test_pg_introspect.py

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test_phantom_cross_package_call.py

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test_phantom_external_import.py

Add an end to end regression test for the reporter's exact repro

2026-09-17 11:01:38 +01:00

test_php_object_creation.py

…

test_php_type_resolution.py

Prefer the alias for a PHP use import edge's target

2026-09-09 17:20:56 +01:00

test_pin_hash_seed.py

fix(cli): wait for the hash-seed re-exec on Windows instead of os.execvpe (#3799)

2026-09-25 15:44:21 +01:00

test_pipeline.py

…

test_provider_registry.py

…

test_prs.py

fix(mcp): prevent PR subprocess stdin hangs

2026-09-05 21:55:35 +01:00

test_prune_sweeps_orphans.py

…

test_python_decorators.py

…

test_python_import_resolution.py

fix(python): resolve nested scan-root imports via namespace projection (#3843)

2026-09-27 18:40:06 +01:00

test_python_parse_memoization.py

perf(resolution): parse each Python file once across both resolution passes

2026-09-11 22:46:27 +01:00

test_python_underscore_resolution.py

…

test_query_cli.py

…

test_query_induced_edges.py

…

test_query_mcp_direction.py

fix(serve): traverse the MCP query_graph undirected so a seed with no outgoing edges reaches its callers

2026-09-07 18:42:56 +01:00

test_query_names_its_graph.py

…

test_querylog.py

…

test_r_extractor.py

fix(r): resolve R6 self$ and private$ intra-class method calls

2026-09-28 09:14:38 +01:00

test_rationale.py

…

test_read_hook.py

Add regression tests for the guard hook timeouts

2026-09-13 17:47:54 +01:00

test_reflect.py

…

test_relation_collapse_precedence.py

fix(build): preserve higher confidence on same-relation edge collision (#3703)

2026-09-21 18:04:04 +01:00

test_replace_or_append_section.py

…

test_report_gap_thresholds.py

Add a regression test for the community listing real node filter

2026-09-28 10:15:38 +01:00

test_report.py

Surface unclassified files in GRAPH_REPORT.md

2026-09-12 17:36:10 +01:00

test_resolve_memoization.py

perf(resolution): memoize Path.resolve() across the symbol-resolution passes

2026-09-11 22:46:36 +01:00

test_ruby_bare_self_send_calls.py

fix(ruby): capture paren-less self-send calls

2026-10-02 17:10:07 +01:00

test_ruby_resolution.py

fix: resolve inherited Ruby member calls

2026-09-16 14:43:05 +01:00

test_rust_builtin_type_hubs.py

fix(rust): stop prelude types becoming god nodes and label constructors

2026-10-02 17:10:07 +01:00

test_rust_self_member_calls.py

fix: resolve generic Rust self calls

2026-09-18 15:16:09 +01:00

test_scala_abstract_methods.py

fix(scala): extract deferred (abstract) method declarations

2026-10-02 17:10:07 +01:00

test_scala_self_type.py

…

test_scip_ingest.py

…

test_search_hook.py

Add regression tests for the guard hook timeouts

2026-09-13 17:47:54 +01:00

test_security.py

…

test_semantic_cache_basename_recovery.py

Add regression test for dangling edge pruning consistency

2026-09-14 18:52:06 +01:00

test_semantic_cache_out_root.py

…

test_semantic_cleanup.py

…

test_semantic_fragment_sanitize.py

…

test_semantic_id_remap_root.py

…

test_semantic_similarity.py

…

test_serve_http.py

…

test_serve.py

fix(serve): get_node/get_neighbors accept node_id/id, not just label

2026-09-22 17:30:28 +01:00

test_settings_merge.py

…

test_skill_auto_refresh.py

feat(cli): refresh stale skills after a package upgrade (#1805)

2026-09-29 14:37:10 +01:00

test_skill_version_warning.py

…

test_skillgen_input_path_injection.py

fix(skillgen): prevent INPUT_PATH shell injection

2026-09-27 18:39:51 +01:00

test_skillgen.py

chore(lock): sync uv.lock for the #3490 dependency-floor bumps; fix stale skillgen windows test

2026-09-12 21:49:56 +01:00

test_solidity_extractor.py

fix(solidity): extract file-level free functions and their calls

2026-09-30 20:41:10 +01:00

test_source_key_memoization.py

perf(resolution): memoize source-key resolution in the id-disambiguation pass

2026-09-11 22:46:36 +01:00

test_sourceless_call_targets.py

fix(extract): keep constructor calls that hit a same-file annotation stub

2026-10-02 17:10:07 +01:00

test_src_layout_import_resolution.py

fix: guard ambiguous absolute Python imports

2026-09-23 17:01:39 +01:00

test_stale_prune.py

…

test_stat_index_husk.py

…

test_stat_index_portability.py

…

test_swift_builtin_noise.py

…

test_swift_computed_properties.py

…

test_swift_cross_file_calls.py

…

test_swift_import_resolution.py

…

test_swift_protocol_requirements.py

fix(swift): extract method requirements declared in a protocol body

2026-09-20 13:59:25 +01:00

test_symbol_resolution.py

…

test_terraform_modules.py

feat(terraform): resolve local module sources and directory topology

2026-09-15 18:01:35 +01:00

test_terraform.py

fix(terraform): redact the value paired with a secret-named name in name/value lists

2026-09-27 18:39:51 +01:00

test_trailing_newline_not_a_syntax_error.py

Add tests for newline char at EOF fix

2026-09-12 17:39:27 +01:00

test_transcribe.py

…

test_tree_html.py

…

test_ts_abstract_methods.py

fix(typescript): extract abstract method signatures

2026-10-02 17:10:07 +01:00

test_ts_decorators.py

…

test_ts_generators.py

…

test_ts_import_require.py

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test_ts_import_type_arguments.py

test(ts): de-flake the normalizer scaling test that reddened v8 CI

2026-09-20 18:53:35 +01:00

test_ts_inheritance.py

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test_ts_namespace.py

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test_ts_new_expression_calls.py

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test_ts_parse_warning.py

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test_ts_receiver_member_calls.py

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test_type_only_import_cycles.py

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test_typescript_enum_members.py

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test_typescript_module_extensions.py

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test_uninstall_scope.py

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test_uninstall_symlink.py

fix(install): keep a symlinked instructions file on uninstall

2026-09-30 20:41:10 +01:00

test_unmapped_at_alias_resolution.py

fix: resolve unmapped @/ imports in JS projects

2026-09-06 16:17:38 +01:00

test_unverified_semantic_shrink.py

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test_validate.py

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test_vbnet_extractor.py

fix(vbnet): resolve type/module-qualified calls to their target method

2026-09-30 20:41:10 +01:00

test_vue_extraction.py

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test_walk_python_tree_iterative.py

perf(resolution): walk the Python tree iteratively, not via recursive yield-from

2026-09-11 22:46:26 +01:00

test_watch_manifest_location.py

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test_watch.py

feat(extract): include Verilog header files

2026-10-02 17:10:08 +01:00

test_wheel_packaging.py

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test_wiki_link_filename_parity.py

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test_wiki_truncation_indicator.py

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test_wiki.py

fix(wiki): keep an article labelled index from overwriting index.md

2026-09-28 10:15:38 +01:00

test_word_count_cache.py

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test_zero_node_no_cache.py

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