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On aider and devin nothing wrote .graphify_semantic.json for a code-only
run, so Part C raised FileNotFoundError, and the --update paragraph sent
the agent from Part A to a merge that reads .graphify_extract.json.
Part B now has the fast-path block, the paragraph names Step 3A, the
fast path, Part C and the merge, and aider's only-deletions guard writes
the file its merge reads.
Adds tests/test_code_only_update_all_hosts.py for the two monoliths and
a skillgen audit entry for the new lines; the 14 generated hosts are
left to #4313.
(cherry picked from commit bbe1a7ca9b)