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upquote must be used after fontenc
otherwise single quotes in verbatim environments will be in trouble; see an example at http://stackoverflow.com/a/12852815/559676
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@@ -14,7 +14,6 @@ $endif$
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\usepackage{amssymb,amsmath}
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\usepackage{ifxetex,ifluatex}
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\usepackage{fixltx2e} % provides \textsubscript
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\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
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\usepackage{lmodern}
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\ifxetex
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\usepackage{fontspec,xltxtra,xunicode}
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@@ -33,6 +32,7 @@ $endif$
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$endif$
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\fi
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\fi
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\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
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% use microtype if available
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\IfFileExists{microtype.sty}{\usepackage{microtype}}{}
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$if(natbib)$
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